Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0401 ATGTGTCGTGGTGCTATCATTGCTGACATCATTCCTCGCCACCGTGGTCGCCTCCTTACTCCCTCCGACATCTGGCCCGACACATTTGGCAACCACCATGACCTCCCCTCGGAGGTTTCTCACTCCGCTCCCTTCCAAAACCCTCAACTTTCCACAGTAGCTGAGCATGCTGAGAAGCCGGCCAAGAGGCAGAGGAAGAACCTTTACAGAGGGATTCGGCAGCGTCCGTGGGGTAAATGGGCCGCGGAGATTCGTGATCCGAGGAAAGGCGTTCGAGTTTGGCTCGGCACTTACAACACCGCGGAGGAAGCTGCCAGGGCCTATGACAGAGAAGCTCGTAAAATCCGTGGCAAGAAAGCCAAGATATCCTGCTCGACGAAAATGGTGTCCCTCAAGTTGCAGAAACGGCTGGCCGCCAGTGTCTTGAAGTGCGGCAGAGGCAAGGTTTGGCTAGATCCCAATGAAGTCAACGAAATCTCCATGGCCAACTCTCGCCAAAACATAAGGAAGTTAGTTAAGGATGGCTTCATTATCAGGAAGCCAACTAAAATTCACTCTCGATCTCGTGCTCGGCGTATGAAGGAGGCCAAGAGAAAAGGACGACACTCTGGATATGGTAAGCGTAAGGGTACAAGGGAGGCAAGGCTTCCAACTAAAATCCTCTGGATGAGAAGGATGCGTGTGCTTAGACGCTTGCTTCGCAAGTACAGGGAATCCAAGAAGATTGACAAGCACATGTACCATGATATGTACATGAAGGTGAAAGGTAATGTTTTCAAGAACAAGAGAGTTCTGATGGAGAGCATACACAAATCTAAGGCAGAGAAGGCAAGAGAGAAAACATTGTCTGACCAGTTTGAAGCCAAGCGTGCCAAGAACAAGGCAAGCAGGGAAAGGAAATTTGCCCGGAGAGAGGAGCGGTTGGCTCAGGGTCCTGGAGAGAAGACACCAGTAGCGCCAACTGCTCCTGCTTCCCAGCCTGCCCAAGTATCAAAGAAATCCAAGAAGTAA 1011 0.5104 MCRGAIIADIIPRHRGRLLTPSDIWPDTFGNHHDLPSEVSHSAPFQNPQLSTVAEHAEKPAKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTYNTAEEAARAYDREARKIRGKKAKISCSTKMVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREERLAQGPGEKTPVAPTAPASQPAQVSKKSKK 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0401 336 SMART Ribosomal_L19e_2 130 273 IPR000196 GO:0003735|GO:0005840|GO:0006412
Acco06g0401 336 SUPERFAMILY DNA-binding domain 68 121 IPR016177 GO:0003677
Acco06g0401 336 SMART rav1_2 68 131 IPR001471 GO:0003700|GO:0006355
Acco06g0401 336 Hamap 50S ribosomal protein L19e [rpl19e]. 130 276 IPR000196 GO:0003735|GO:0005840|GO:0006412
Acco06g0401 336 Pfam Ribosomal protein L19e 131 272 IPR000196 GO:0003735|GO:0005840|GO:0006412
Acco06g0401 336 CDD Ribosomal_L19e_E 131 294 IPR033935 GO:0003735|GO:0022625
Acco06g0401 336 MobiDBLite consensus disorder prediction 184 212 - -
Acco06g0401 336 ProSiteProfiles AP2/ERF domain profile. 68 125 IPR001471 GO:0003700|GO:0006355
Acco06g0401 336 ProSitePatterns Ribosomal protein L19e signature. 134 153 IPR023638 -
Acco06g0401 336 CDD AP2 69 122 IPR001471 GO:0003700|GO:0006355
Acco06g0401 336 FunFam Ethylene-responsive transcription factor 2 67 126 - -
Acco06g0401 336 PANTHER 60S RIBOSOMAL PROTEIN L19 128 315 IPR039547 GO:0003723|GO:0003735|GO:0022625
Acco06g0401 336 FunFam Ribosomal protein L19 128 183 - -
Acco06g0401 336 MobiDBLite consensus disorder prediction 271 311 - -
Acco06g0401 336 FunFam Ribosomal protein L19 184 319 - -
Acco06g0401 336 Gene3D - 129 183 IPR015972 GO:0003735|GO:0005840|GO:0006412
Acco06g0401 336 MobiDBLite consensus disorder prediction 271 336 - -
Acco06g0401 336 Gene3D AP2/ERF domain 68 126 IPR036955 GO:0003700|GO:0006355
Acco06g0401 336 Gene3D - 184 315 - -
Acco06g0401 336 MobiDBLite consensus disorder prediction 322 336 - -
Acco06g0401 336 MobiDBLite consensus disorder prediction 184 206 - -
Acco06g0401 336 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Acco06g0401 336 PRINTS Ethylene responsive element binding protein signature 91 107 IPR001471 GO:0003700|GO:0006355
Acco06g0401 336 Pfam AP2 domain 69 117 IPR001471 GO:0003700|GO:0006355
Acco06g0401 336 SUPERFAMILY Ribosomal protein L19 (L19e) 130 271 IPR035970 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0401 Acco-ChrAcco06 2497659 2501554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0401 128 336 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 85.646 2.61e-126 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco06g0401 Ribosomal_L19e 4.2e-64 No_clan