Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0394 ATGGATGTCAAAGCAGAGAAAATCTGCAGGGAATGCCACACGAGGACTACACCACTATGGAGGGCAGGTCCAGATGGGCCAAGGTCTCTTTGTAACGCGTGCGGACTACGATTCAGAAAGAGAATGGCTCTTCCGGGACTGAACAGTGCAGAATCACAAAAGCGCAGGAAGAGGACTCCAACTGATAGAGTCAAGAAGATAAAAGAGGAAGAGGAAGCCGCCATATCACTCATGGCTCTTTCTTGTGGCTTCGATGCTAGAAGCCAACAAGAAACAACTTATCCATTTCATTCAGTACTGTAG 303 0.4752 MDVKAEKICRECHTRTTPLWRAGPDGPRSLCNACGLRFRKRMALPGLNSAESQKRRKRTPTDRVKKIKEEEEAAISLMALSCGFDARSQQETTYPFHSVL 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0394 100 SMART GATA_3 3 57 IPR000679 GO:0006355|GO:0043565
Acco06g0394 100 ProSitePatterns GATA-type zinc finger domain. 9 34 IPR000679 GO:0006355|GO:0043565
Acco06g0394 100 PANTHER OS01G0976800 PROTEIN 5 57 - -
Acco06g0394 100 ProSiteProfiles GATA-type zinc finger domain profile. 3 39 IPR000679 GO:0006355|GO:0043565
Acco06g0394 100 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 53 - -
Acco06g0394 100 CDD ZnF_GATA 8 41 IPR000679 GO:0006355|GO:0043565
Acco06g0394 100 Gene3D - 4 73 IPR013088 GO:0006355|GO:0008270
Acco06g0394 100 Pfam GATA zinc finger 9 41 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0394 Acco-ChrAcco06 2447451 2447895 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0394 6 83 C2C2-Gata Transcription Factor Family AT5G49300 42.574 2.97e-16 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Acco06g0394 GATA 6.6e-18 CL0167