Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0381 ATGTTGGAGACAAGTATTCCATCGCAAGTGTTTCTCAACATTCGTTTTGTTCTCTATGGTTTTGATCCTATCAACGAAAGCAAGGTTCGATTCAAGCTTGTAAATGGCGGTGGAGTTGATGTTGGTCAGTACGGTCCAAGTTGCACACATGTCGTTGTAGGCAAACTTACTTATGATGATCCTATTTGCGTTGCTGCAAGAAATGATGGGAAGACGCTCGTCACTGCTTTGTGGGTTGATCATAGTGTTGACATTGGAATGGCAGTTGATGCGACCTCCGTCATGTATAGGCCCCTGAAAGATTTAAATGGTATACCGGGTGCTAAGAATTTGGTTGTTTGCTTGACTGGTTATCAACGTCAGGATCGGGATGACATTATGACAATGGTTGGCCTGATGGGTGCTCAATTTTCTAAGCCATTGGTGGCGAGCAAAGTTACTCATCTTATATGCTACAAGTATGAAGGAGAAAAGTATGAGCTTGCCAGTAGACTGCAGACAATTAAGTTAGTTAATCACCGGTGGTTAGAAGACTGTTTGAAGGATTGGTTGCTTCTCCCTGAAGAAAAATATAAGAAGAGTGGTTATGAACTGGAGAGGATGGCAGAAGAGGCTAAAGACTCTGAAGAAGAAGCTGAAGATATCGTATCAGGGAAGTCTGGGGGAAGAGGCATCACTAAGAGTCCCTTTAGTTCAAAAATGAATACTGGTACACCCCATAACTCATCAAAACCTGTAGTAGTAGAATCAAATGCCTTTCCGGGTTCTGCTGCTCCTGAGGGATTGCGGAAAGCAAATGAGGGGCATGAGTCTATATCAATTCTAAAAAATGAGAATGCGTCTGATCAGACCAGAAACGTCCATCATGATGTTCTAGAATCAAGTTCTGGGGATCTTGGCGTTTCCAGGCACGATGCATCTGGTCAGCTACCCGACACATGTGCCAAGACCACTAAACCTAAAAACACTGGTGTTCAAGATGCTGTTGACTGCCAGAATCTTGGCATTCCTGGAAATGCTGATTCATCAGGTCATGCTCCTGATCTTCAGCCTAGAACTTCCGAGTATGGGAAGTTGGTTAATGACTTGAGATTGACTTCTGAAAGTGTTGAAGGACATCTACGCTCAGATGCAAGGGATAGTGCTGCAACTAGCCCTATGAAAAACTTAAAGAGATTTTCTCCTTCAAGTGGCTTAAATGAAAACCTTGGCAATTTAAGTGAGCCTTCTGCAGCACCTTTAAATAATTTAAAATTAAGAAATGACCTAGAAGCCTCTTCGAACAAGGTGGAAAAGGCAAGTGACAGCATCAACTTCGACTTTGTTGAAGGTTCTGGGAAAGGTAACCGTTTTAGTAACAAGAAAAACAAGAAAGGGCCAAGTAGTTTGTTACCTAAAAAGAGGTCGATTGAAGCTTCTACTAAATTAAATTCAATGATGACGAAAGATACTAAACTTTCCATTGAAAGATCCCCATCAGCAGATATCAATAAACTACCAGAGATAGAACACCATTTTCCTGTGGGTAGAGATGATATGAAGGACAAAGAATCTGTAAGCTCAGAGTCTCTGCGAGATGATGCACCCAAAATAAATGGCAAGCCTGATATTGCAGATCGTGGCAGGGAAGAAGTTGCTCAAGATTGCAATGAAACAGAACCTCATAATGCCAGGAATGATCTTGAATGCTCATATTCGAGTAAAAAGAAGTCTAGAAATGAGGAATCAACTGGTCATGCTACCCTGGATTTATGCAACAAAGTAAGTGATAAGTTTATTAGAAAATCACCCCGCAAGAAGACAATTGCCAAGAAATGTTTAGGTTCTAGACCTAAATCAGGTGCTACTGCTAAAATGAAGAGTTTGATTTCATTAGATGAACGTACCCCTCAAGTTGATGGTGCAGGTTGTTTAAGTGGATGGAAAGAGACGGCACTTTGTGATGGCAAGAGACTTGTTAAATCCTCAAAAATTGTTAGTGTTGAAACATCAATGGAGCAGGAGAGCGTTTGCAAATCTGCAGAAAATACCAATGGCAGAGAATTTCGGGATGAAGAAACAGAGGCTCCGGATGAAAAAGTTAAGTACAAGGGACTGACAGTCGATGAAGACAATCGTGAATCAGTTAATATTTTGAAAAACTCTGTTACGCAGACAGAAGATAAGCTCGAAGCAACTCACCATGCATCAAAATTTAAATCACAGCCTCCAAAGGAAGGTGCAAATGGAACTAAGCCCGTGGAACTTGAGCTGGTAGACTCAACCCTTAAAGGAAAAGGAAAGCCTAAAGGCAGAAAACTTACAACAGGTAGAACCAAGAATGCCCCATTTACCAAGGACACAATGAGGCCTGAGGAGGCTGCGTCCAGTGAGAGGAAAGATGAGACAGATATGGAAACAGCCTTATTTCCTGCCGGTAAAGATAGTAGCTCAGCATTGCATACAAATAGTGCAGGGAGTTTTCAGGAAGTTGAGAAGGAAAACAGGCCAATTGATGGAGAGGGTATAAACATTGGAAACTCGGTTATTAAAACTAGTGCAGGTCAAGCAAAGGTCAATCAACGGACAAAAGCTCTTAGTTCATCTACATTAGAAGATAACAGAAGAGTGAAGAAAGAAGCTGCATGTTTTCTAGTAAGTGGGCACCGCTTACAGAGAAAGGAGTTTCAACAATTGATTAGGCGATTGAAAGGAAGGGTCTGCCGGGATTCCCATCAGTGGTCGTATCTGGCAACACACTACATAGCCCCAGATCCTGTACGCAGGACTGAGAAATTTTTCGCTGCTGCTGCATCAGGGAGGTGGATTCTTAAAACTGATTACTTAACTGCCTGTAGTGAGGCCGGTCAATTCTTGACCGAAGAACCTTATGAATGGCACAAGAGTGGCCTTAGCGAGGATGGTGCAATCAATTTGGAGGCTCCAAGAAGATGGCGGCTTTTGAGAGAGAAGACAGGTCATGGCGTCTTATATGGAATGCGCATTATTGTATACGGCGATTGCATTGTCCCACCTTTGGATACATTGAAGCGTGTAGTCAAAGCAGGAGATGGAACTATATTGGCAACTTCTCCTCCTTACACCCGGTTCCTTGATACCGGTATTGACTATGCCATAGTTAGCCCGGGCATGCCACGTGTGGACATGTGGGTCCAAGAATTCTTAAAACATGAGATTCCCTGCGTTTTAGCTGACTACCTGGTGGAGTACGTGTGCAAGCCCGGGTTCTCCCTGGAGAAACATGTACTGTATGGGACTCATGCCTGGGCAGAGAGGTCATTTGCTAACCTTCAAAGCAAGGCAGAAGAAATCATCGAGGATCCTCCAGAAATTGATGATAATGACACAGCTTGCCAAGTATGTGGATCTCGAGATAGAGGAGACGTAATGCTGATATGTGGTGATGAAAGTGGTTCCGTTGGTTGTGGAGTTGCTATCCATATCGATTGCTGCGATCCTCCTCTGAAAGATGTTCCTGAAGAGGATTGGTTTTGTCCCAAGTGCACTGAAACCCGAAACTGCTCTAGCTCTAACAAGAAAAGGAAAAAAGGCGTCTTGTCTTCCTCGAAGATCAAGTGA 3579 0.43 MLETSIPSQVFLNIRFVLYGFDPINESKVRFKLVNGGGVDVGQYGPSCTHVVVGKLTYDDPICVAARNDGKTLVTALWVDHSVDIGMAVDATSVMYRPLKDLNGIPGAKNLVVCLTGYQRQDRDDIMTMVGLMGAQFSKPLVASKVTHLICYKYEGEKYELASRLQTIKLVNHRWLEDCLKDWLLLPEEKYKKSGYELERMAEEAKDSEEEAEDIVSGKSGGRGITKSPFSSKMNTGTPHNSSKPVVVESNAFPGSAAPEGLRKANEGHESISILKNENASDQTRNVHHDVLESSSGDLGVSRHDASGQLPDTCAKTTKPKNTGVQDAVDCQNLGIPGNADSSGHAPDLQPRTSEYGKLVNDLRLTSESVEGHLRSDARDSAATSPMKNLKRFSPSSGLNENLGNLSEPSAAPLNNLKLRNDLEASSNKVEKASDSINFDFVEGSGKGNRFSNKKNKKGPSSLLPKKRSIEASTKLNSMMTKDTKLSIERSPSADINKLPEIEHHFPVGRDDMKDKESVSSESLRDDAPKINGKPDIADRGREEVAQDCNETEPHNARNDLECSYSSKKKSRNEESTGHATLDLCNKVSDKFIRKSPRKKTIAKKCLGSRPKSGATAKMKSLISLDERTPQVDGAGCLSGWKETALCDGKRLVKSSKIVSVETSMEQESVCKSAENTNGREFRDEETEAPDEKVKYKGLTVDEDNRESVNILKNSVTQTEDKLEATHHASKFKSQPPKEGANGTKPVELELVDSTLKGKGKPKGRKLTTGRTKNAPFTKDTMRPEEAASSERKDETDMETALFPAGKDSSSALHTNSAGSFQEVEKENRPIDGEGINIGNSVIKTSAGQAKVNQRTKALSSSTLEDNRRVKKEAACFLVSGHRLQRKEFQQLIRRLKGRVCRDSHQWSYLATHYIAPDPVRRTEKFFAAAASGRWILKTDYLTACSEAGQFLTEEPYEWHKSGLSEDGAINLEAPRRWRLLREKTGHGVLYGMRIIVYGDCIVPPLDTLKRVVKAGDGTILATSPPYTRFLDTGIDYAIVSPGMPRVDMWVQEFLKHEIPCVLADYLVEYVCKPGFSLEKHVLYGTHAWAERSFANLQSKAEEIIEDPPEIDDNDTACQVCGSRDRGDVMLICGDESGSVGCGVAIHIDCCDPPLKDVPEEDWFCPKCTETRNCSSSNKKRKKGVLSSSKIK 1192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0381 1192 ProSiteProfiles Zinc finger PHD-type profile. 1115 1171 IPR019787 -
Acco06g0381 1192 MobiDBLite consensus disorder prediction 1171 1192 - -
Acco06g0381 1192 Gene3D BRCT domain 868 985 IPR036420 -
Acco06g0381 1192 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1084 1172 IPR013083 -
Acco06g0381 1192 MobiDBLite consensus disorder prediction 224 249 - -
Acco06g0381 1192 Pfam BRCA1 C Terminus (BRCT) domain 879 945 IPR001357 -
Acco06g0381 1192 SMART BRCT_7 8 86 IPR001357 -
Acco06g0381 1192 SMART BRCT_7 106 183 IPR001357 -
Acco06g0381 1192 SMART BRCT_7 987 1074 IPR001357 -
Acco06g0381 1192 SMART BRCT_7 868 949 IPR001357 -
Acco06g0381 1192 Gene3D BRCT domain 987 1083 IPR036420 -
Acco06g0381 1192 MobiDBLite consensus disorder prediction 294 353 - -
Acco06g0381 1192 MobiDBLite consensus disorder prediction 778 801 - -
Acco06g0381 1192 SUPERFAMILY BRCT domain 7 92 IPR036420 -
Acco06g0381 1192 Gene3D BRCT domain 1 95 IPR036420 -
Acco06g0381 1192 MobiDBLite consensus disorder prediction 467 491 - -
Acco06g0381 1192 SUPERFAMILY BRCT domain 109 192 IPR036420 -
Acco06g0381 1192 Gene3D BRCT domain 99 219 IPR036420 -
Acco06g0381 1192 SUPERFAMILY FYVE/PHD zinc finger 1108 1174 IPR011011 -
Acco06g0381 1192 Pfam twin BRCT domain 111 175 IPR001357 -
Acco06g0381 1192 SUPERFAMILY BRCT domain 878 980 IPR036420 -
Acco06g0381 1192 CDD BRCT_TopBP1_rpt7 876 949 - -
Acco06g0381 1192 MobiDBLite consensus disorder prediction 370 413 - -
Acco06g0381 1192 MobiDBLite consensus disorder prediction 441 579 - -
Acco06g0381 1192 MobiDBLite consensus disorder prediction 713 825 - -
Acco06g0381 1192 MobiDBLite consensus disorder prediction 387 413 - -
Acco06g0381 1192 MobiDBLite consensus disorder prediction 677 693 - -
Acco06g0381 1192 MobiDBLite consensus disorder prediction 809 823 - -
Acco06g0381 1192 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 759 1183 IPR044254 -
Acco06g0381 1192 MobiDBLite consensus disorder prediction 496 577 - -
Acco06g0381 1192 MobiDBLite consensus disorder prediction 203 265 - -
Acco06g0381 1192 Pfam PHD-finger 1118 1170 IPR019787 -
Acco06g0381 1192 MobiDBLite consensus disorder prediction 311 329 - -
Acco06g0381 1192 ProSiteProfiles BRCT domain profile. 109 193 IPR001357 -
Acco06g0381 1192 MobiDBLite consensus disorder prediction 670 693 - -
Acco06g0381 1192 MobiDBLite consensus disorder prediction 720 734 - -
Acco06g0381 1192 ProSiteProfiles BRCT domain profile. 877 959 IPR001357 -
Acco06g0381 1192 SMART PHD_3 1117 1169 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0381 Acco-ChrAcco06 2376677 2382748 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0381 129 214 Core DNA Replication Machinery Family AT4G02110 74.419 6.36e-35 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Acco06g0381 BRCT 2.1e-05 CL0459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco06g0381 06 2376677 2382748 Acco06g0381 06 2376677 2382748 ECH