Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0347 ATGAATGGCGAGCCAAACAACTCGTTCGGTGCTGGAGCACCTCCCTCTACCAATGGCAACTCTGGATATGGTTTTAACCATTCCTTGCCTCGTCCGGGGCGGAAACGAGGTTGGCATCTCGCTACCCAAGGAACTCCTCCAGATCAAGTTGACGGTGCTTGTAATGTGAAACTCTACATTGCTCCAGTTCCACGAACATCGACAGAAAATGATATCCGCCTTGTGTTTGAACAACATGGAACTATAGTTGAAGTTGTTCTTTTGTGGGATAAGAAGACAGGTGAAAGACAAGGAAGTTGTTTTGTGAAATTTGCAACGTTAGATGAAGCTGAGAGGGCCATCAAAGCTTTAAGCAATCGATATACTTTTCCTGGGGAGTCATTGCCTATTGTTGTCAGATTTGCTGACCGAGGAAAAGGGCGTCTTGGGACTCGAGGGTTCTCCCAAATTATGGATAAAAAAAATCAATCAGAAGAGGTGGTGGACAAAGTGTTTGTTGGTCACATCAACAAAGAAGCTTCAAAAAATGAAATTGAAGAAGTATTTTCTCCTTATGGACATATAGAGGACATCTTCATTGCTCAATCTCGCGGCTACGGTTTTGTCAAATTTTCAAACAAAGACATGGCTTTGGCAGCAATCAAAGGGCTGAACAATGCATTCACAATGAGGGGTTGTGATCATCCATTAATTGTTCGTTTTGCGGAACCTAAGAAACACAAAACTGGAGAACCCAGGGTCAACCATATGCCTGGGAATGCATTTGGTCCATGCTCTCAAGAACCAGCAGTCTGGCTGCCACCAAACTTTGGTGATTCCATTGGAGGGAGTAATATGCCTATGGCCCCGCATCATCCCACAATTCCACACCCACAAGTTGCTCCTCATATTCGAAACTGGGAACCTGCTAATACTATGGTGCAGCAACCATTTCCTTCCAAGCAAGCACATCCACAGTCGGCTCCAGTGCTTTCCCAATCCATGCAGGCTCAAAAGTTATCTTCTCAACCAGTTGTTACCGAGGTGCTGAAGCAGTCACATCCAACAGATTCATCAACTCAAAATATAGAGCAGCAGCTAAATTCACAGCCTTCCCAAGCCGGAGGCAGTCCTTGTGCTGTTGCGGGCAGTAATTCACCAGATATGCCAGAAAGTTCTGACGAGGAGGTTTATCCAGATTGTGACTGGAGTGAACATATCTGTCCTGATGGTAATAAGTACTACTATAATTGCGTGACTTGTGAAAGTAGGTGGGAGAAGCCTGAGGAATATGCCTTGTATGAGAAGAAGCAAGAGCAGGAGGATCATGGCTGTCCACATTTATTGTTGGCATCATCTTCCTGA 1344 0.4494 MNGEPNNSFGAGAPPSTNGNSGYGFNHSLPRPGRKRGWHLATQGTPPDQVDGACNVKLYIAPVPRTSTENDIRLVFEQHGTIVEVVLLWDKKTGERQGSCFVKFATLDEAERAIKALSNRYTFPGESLPIVVRFADRGKGRLGTRGFSQIMDKKNQSEEVVDKVFVGHINKEASKNEIEEVFSPYGHIEDIFIAQSRGYGFVKFSNKDMALAAIKGLNNAFTMRGCDHPLIVRFAEPKKHKTGEPRVNHMPGNAFGPCSQEPAVWLPPNFGDSIGGSNMPMAPHHPTIPHPQVAPHIRNWEPANTMVQQPFPSKQAHPQSAPVLSQSMQAQKLSSQPVVTEVLKQSHPTDSSTQNIEQQLNSQPSQAGGSPCAVAGSNSPDMPESSDEEVYPDCDWSEHICPDGNKYYYNCVTCESRWEKPEEYALYEKKQEQEDHGCPHLLLASSS 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0347 447 Gene3D - 151 244 IPR012677 -
Acco06g0347 447 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 58 126 IPR000504 GO:0003723
Acco06g0347 447 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 164 222 IPR000504 GO:0003723
Acco06g0347 447 SUPERFAMILY RNA-binding domain, RBD 42 145 IPR035979 GO:0003676
Acco06g0347 447 SUPERFAMILY RNA-binding domain, RBD 156 243 IPR035979 GO:0003676
Acco06g0347 447 Gene3D - 49 142 IPR012677 -
Acco06g0347 447 SMART ww_5 391 423 IPR001202 GO:0005515
Acco06g0347 447 SMART rrm1_1 57 133 IPR000504 GO:0003723
Acco06g0347 447 SMART rrm1_1 163 233 IPR000504 GO:0003723
Acco06g0347 447 MobiDBLite consensus disorder prediction 310 384 - -
Acco06g0347 447 Pfam WW domain 395 421 IPR001202 GO:0005515
Acco06g0347 447 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 162 237 IPR000504 GO:0003723
Acco06g0347 447 CDD WW 394 423 IPR001202 GO:0005515
Acco06g0347 447 MobiDBLite consensus disorder prediction 310 391 - -
Acco06g0347 447 Gene3D - 392 436 - -
Acco06g0347 447 SUPERFAMILY WW domain 395 427 IPR036020 GO:0005515
Acco06g0347 447 PANTHER RNA BINDING PROTEIN 39 423 - -
Acco06g0347 447 MobiDBLite consensus disorder prediction 1 28 - -
Acco06g0347 447 ProSiteProfiles WW/rsp5/WWP domain profile. 396 423 IPR001202 GO:0005515
Acco06g0347 447 MobiDBLite consensus disorder prediction 1 25 - -
Acco06g0347 447 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 56 137 IPR000504 GO:0003723
Acco06g0347 447 ProSitePatterns WW/rsp5/WWP domain signature. 396 421 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0347 Acco-ChrAcco06 2185002 2190844 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0347 58 241 Eukaryotic Initiation Factors Gene Family AT3G16380 25.773 9.93e-11 62.0