LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco06g0342	ATGGATCACCATCAAGTGTTTGATTACTGTAACAATATGATTAATAACATCAAGTATATGGGTGGTGATGAGATAGCGAGAAGCGAGTCAGATTGTGGATCGTCAGGGAGTGCAGAGGAGATGATGGGGGTAAGGAAAGGGCCGTGGACGGAGGAAGAAGATGCTATTCTGGCCAACCACATCTCCCTCCACGGCGAAGGTCACTGGAACTTTCTCGCTCGCTCCGCAGGTCTGAAGCGAACGGGGAAAAGCTGCAGATTAAGATGGCTAAACTACCTGCGCCCTGGTGTCCGGCGTGGCAATATAACCCTCCAAGAACAGCTCTTGATTCTTAATCTCCATTCCCGATGGGGCAACAGGTGGTCGAAGATTGCGCAAGAGTTTCCAGGGAGAACAGACAATGAGATAAAGAACTATTGGAGGACGCGAGTGGTGAAGCAGGCCAAACAAATGAAATGTGATGTGAATAGCAAAGAGTTCAGAGACGCCTTGCGTTTCGTCTGGATTCCTCGCTTGGTGGAGCGCATCCAGGCATCGTCATCGTCATCGTCTCACACTGCATCACCCACCAGCTGCCACTGCTATACGGACGCCACTTCTCTGTCTGATCATTCCATGGCCAGTGGTGACGACGACACCTCCTCTCTTCCTCCTCCTGCAGAAAAACAAGCCTCCGCCTCTGGGATTCATCACTTGGAATATTCCCCAGAACTCCAACCATTTGAAGAAGCTAATGCTGATTTCTGGACTTACGAAAACATATGCTTCTTGCAGCAACAGCTTGCGGATGACTCCTGA	798	0.5	MDHHQVFDYCNNMINNIKYMGGDEIARSESDCGSSGSAEEMMGVRKGPWTEEEDAILANHISLHGEGHWNFLARSAGLKRTGKSCRLRWLNYLRPGVRRGNITLQEQLLILNLHSRWGNRWSKIAQEFPGRTDNEIKNYWRTRVVKQAKQMKCDVNSKEFRDALRFVWIPRLVERIQASSSSSSHTASPTSCHCYTDATSLSDHSMASGDDDTSSLPPPAEKQASASGIHHLEYSPELQPFEEANADFWTYENICFLQQQLADDS	265

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco06g0342	265	CDD	SANT	103	142	IPR001005	-
	Acco06g0342	265	Gene3D	-	46	98	-	-
	Acco06g0342	265	ProSiteProfiles	Myb-like domain profile.	94	144	IPR001005	-
	Acco06g0342	265	MobiDBLite	consensus disorder prediction	203	227	-	-
	Acco06g0342	265	CDD	SANT	48	93	IPR001005	-
	Acco06g0342	265	ProSiteProfiles	Myb-like domain profile.	41	93	IPR001005	-
	Acco06g0342	265	SMART	sant	98	146	IPR001005	-
	Acco06g0342	265	SMART	sant	45	95	IPR001005	-
	Acco06g0342	265	Pfam	Myb-like DNA-binding domain	46	93	IPR001005	-
	Acco06g0342	265	Pfam	Myb-like DNA-binding domain	99	142	IPR001005	-
	Acco06g0342	265	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	98	148	IPR017930	-
	Acco06g0342	265	FunFam	MYB transcription factor	103	166	-	-
	Acco06g0342	265	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	41	97	IPR017930	-
	Acco06g0342	265	Gene3D	-	103	144	-	-
	Acco06g0342	265	PANTHER	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	43	213	IPR044676	GO:0003700\|GO:0006355\|GO:0043565
	Acco06g0342	265	FunFam	Myb transcription factor	46	98	-	-
	Acco06g0342	265	SUPERFAMILY	Homeodomain-like	43	140	IPR009057	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco06g0342	Acco-ChrAcco06	2127897	2128949	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco06g0342	34	236	MYB Transcription Factor Family	AT2G47190	58.824	3.22e-78	236

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Acco06g0342		Myb_DNA-binding	2.4e-14	CL0123