Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0341 ATGAAGGTGGAAGGCGAGAGTAGGAGGAAGACACTACAGAGTGAAGATGAGATGGGCATAAGGAAGGGTCCTTGGACTGTGGAAGAGGACACCATTCTGGTCAATTACATCGCCATCCACGGCGAAGGTCGCTGGAATTCCGTCGCCCGCTGTGCCGGCACGTACTCTGTTCCTTCTCTCTGCTTGATTGCGCCTTCAAAGTTGTTAGCCCACAGTTTGAAGAGAACGGGCAAGAGTTGCAGGTTAAGGTGGCTGAACTACTTGCGTCCGGATGTTAGGCGTGGGAATATCACGCTGCAGGAACAGATAGTAATTCTTGATCTGCACTCTCGATGGGGAAACAGGTGGTCGAAAATAGCGCAGCACTTGCCGGGAAGAACAGACAATGAGATTAAGAATTATTGGAGGACGAGGGTGATGAAGCAGGCGAAGCAGCTCAAATGCGATGTCAACAGCAAGCAGTTCAGAGACACCATGCGTTACGTGTGGATGCCCCGCTTGCTGGAGCGGATGTGGGGCTCCCCATCTGAATACAACCCGAACAGCCAACCCATCCCCGTCGACCCGAATCACTCCTCCGTCACGCCTCGCAATATCCAGTTCCACCAAGCCCCGTCTTCTCATTGGCAGGGTCATCATCTTTCGGACGGTTCCCCCAGCGGATCGGAAGTCTGCCCGCGGGTTGTATCGGAACAGGGAAATAGTGCCTTGGGCGGCGGCGGCGGGGAGTGGGCTGAGACATTGTGGAGCGACGACAATGTTTGGTTTTTGCAACAACAACTTTTCGAAGATCCGTAA 798 0.5376 MKVEGESRRKTLQSEDEMGIRKGPWTVEEDTILVNYIAIHGEGRWNSVARCAGTYSVPSLCLIAPSKLLAHSLKRTGKSCRLRWLNYLRPDVRRGNITLQEQIVILDLHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVMKQAKQLKCDVNSKQFRDTMRYVWMPRLLERMWGSPSEYNPNSQPIPVDPNHSSVTPRNIQFHQAPSSHWQGHHLSDGSPSGSEVCPRVVSEQGNSALGGGGGEWAETLWSDDNVWFLQQQLFEDP 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0341 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 89 143 IPR017930 -
Acco06g0341 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 88 IPR017930 -
Acco06g0341 265 SMART sant 21 90 IPR001005 -
Acco06g0341 265 SMART sant 93 141 IPR001005 -
Acco06g0341 265 ProSiteProfiles Myb-like domain profile. 89 139 IPR001005 -
Acco06g0341 265 FunFam MYB transcription factor 98 161 - -
Acco06g0341 265 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 18 204 IPR044676 GO:0003700|GO:0006355|GO:0043565
Acco06g0341 265 Gene3D - 97 160 - -
Acco06g0341 265 Gene3D - 23 93 - -
Acco06g0341 265 ProSiteProfiles Myb-like domain profile. 17 88 IPR001005 -
Acco06g0341 265 SUPERFAMILY Homeodomain-like 18 135 IPR009057 -
Acco06g0341 265 CDD SANT 98 137 IPR001005 -
Acco06g0341 265 CDD SANT 24 88 IPR001005 -
Acco06g0341 265 MobiDBLite consensus disorder prediction 204 226 - -
Acco06g0341 265 Pfam Myb-like DNA-binding domain 22 88 IPR001005 -
Acco06g0341 265 Pfam Myb-like DNA-binding domain 94 137 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0341 Acco-ChrAcco06 2119138 2120106 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0341 20 258 MYB Transcription Factor Family AT1G48000 53.527 7.30e-78 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco06g0341 Myb_DNA-binding 3.4e-14 CL0123