LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco06g0333	ATGGCGTCACAGGGTGTAACACATGCTTCTAAGTTAACGGATGTAAAGGCTAATACAAATGGCATTGATAAATTGCCTTCCGAGATGAATGAAATGAAAATTAGGGACGACAAGGAAATGGAAGCAACTGTTGTAGATGGAAACGGGACTGAAACAGGACATATAATTGTCACCACCATTGGTGGTAAAAGTGGCCGGCCAAAGCAGACAATAAGCTACATGGCTGAGCATGTTATTGGGCATGGATCTTTTGGAGTAGTTTTCCAGGCAAAGTGCTTGGAGACGGGTGAAACTGTGGCTATAAAAAAGGTTCTTCAAGACAAGAGGTACAAGAACCGAGAACTGCAAACCATGCGTCTTCTTGACCACCTTAACATTGTATCTTTGAAGCACTGTTTCTTTTCAACAACTGAAAAAGAGGAGCTTTACCTGAACTTGGTATTAGAGTATGTTCCTGAGACTCTCCATCGGGTGATCAGACACTATAACAAAATGAATCAAAAAATGCCATTGATATATGTCAAACTTTATTTTTACCAGATATGTAGAGCACTTGCTTACATTCACAACAGTATTGGAGTGTGTCACAGGGACATAAAACCTCAAAATTTACTGGTTAATCCTCACACACATCAGCTGAAGCTATGCGACTTTGGAAGTGCAAAAGTGTTGGTAAAAGGGGAACCAAACATATCATATATCTGTTCTAGGTACTATAGAGCTCCTGAGCTCATCTTTGGTGCTACTGAGTACACCACAGCCATTGACATCTGGTCTGCTGGTTGCGTACTTGGTGAACTATTGCTTGGTCAGCCTCTCTTTCCTGGCGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAGGTTTTGGGCACTCCAACAAGGGAAGAAATCAAGTGCATGAATCCTAATTACACAGAATTCAAATTCCCCCAAATTAAAGCTCATCCTTGGCACAAGATCTTTCACAAACGCATGCCATCTGATGCTGTGGATATCGTCTCAAGACTTCTGCAGTACTCTCCCAATCTTCGAATCACAGCTCTGGAGGCTCTTGGTCACCCGTTCTTTGATGAGCTGCGCGACCCAAACACTCGATTGCCAAATGGGCGTTTCCTCCCCCCACTCTTCAACTTCAAGGCGAATGAGCTCAAGGGAGTGCCCGCAGAGATGCTGGTGAAGCTTATTCCTCCACATGCAAGAAAGCAGTGCGCTTTGTTTGGGGCATAA	1230	0.4341	MASQGVTHASKLTDVKANTNGIDKLPSEMNEMKIRDDKEMEATVVDGNGTETGHIIVTTIGGKSGRPKQTISYMAEHVIGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHLNIVSLKHCFFSTTEKEELYLNLVLEYVPETLHRVIRHYNKMNQKMPLIYVKLYFYQICRALAYIHNSIGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLGELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPSDAVDIVSRLLQYSPNLRITALEALGHPFFDELRDPNTRLPNGRFLPPLFNFKANELKGVPAEMLVKLIPPHARKQCALFGA	409

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco06g0333	409	ProSitePatterns	Protein kinases ATP-binding region signature.	79	103	IPR017441	GO:0005524
	Acco06g0333	409	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	194	206	IPR008271	GO:0004672\|GO:0006468
	Acco06g0333	409	SMART	serkin_6	73	357	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco06g0333	409	Pfam	Protein kinase domain	74	357	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco06g0333	409	FunFam	Glycogen synthase kinase-3 beta	57	152	-	-
	Acco06g0333	409	CDD	STKc_GSK3	68	360	IPR039192	-
	Acco06g0333	409	SUPERFAMILY	Protein kinase-like (PK-like)	72	382	IPR011009	-
	Acco06g0333	409	ProSiteProfiles	Protein kinase domain profile.	73	357	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco06g0333	409	PANTHER	GLYCOGEN SYNTHASE KINASE-3 ALPHA	37	403	-	-
	Acco06g0333	409	FunFam	Shaggy-related protein kinase kappa	153	401	-	-
	Acco06g0333	409	Gene3D	Transferase(Phosphotransferase) domain 1	153	401	-	-
	Acco06g0333	409	Gene3D	Phosphorylase Kinase; domain 1	57	152	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco06g0333	Acco-ChrAcco06	2078286	2081703	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco06g0333	79	364	MAP Kinase Gene Family	AT3G45640	35.932	1.40e-57	191

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_GSK	Acco06g0333		Pkinase	4.3e-64	CL0016