Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0312 ATGGGCAAAACCTCTAGTTCATCGTCGTCGTCGTTTAGCAGTAACAGCAACGGCCACGCCGCTTTCTCAACCGCATCTTCTCTCGAACACCTTGCCACAGATCTTAGGCTTGGGCTCAGTACTTCACCCACCCCAAATCTTCACTCTTGTATTTCAAGGAGGGAACCTTCAGATAAGAGGACGCTGGGAAGCAGTGGTTCACATGAAGCTGAAGTAAATGGTCACAGCCTCTTTGTAAAGGTGTACATGGAAGGGATTCCCATAGGCAGAAAACTGGATTTATTAGCTCAAGATGGCTACCACGAGTTAATAAAGACGCTCGAGCACATGTTTGACACTACCATTACCTCGGGCTCTGAGATGGAGGAAGTACTACTTCATCAACCAGAGAGGTGGCATGTGCTGACGTACGAAGATGAGGAAGGGGACTTGATCATGGTTGGAGATATCCCTTGGGAGATGTTCTTATCCACTGTCAGGAGATTGAGGATCGCCAGGGTAGACGCAATCGGGTGTTAG 519 0.4855 MGKTSSSSSSSFSSNSNGHAAFSTASSLEHLATDLRLGLSTSPTPNLHSCISRREPSDKRTLGSSGSHEAEVNGHSLFVKVYMEGIPIGRKLDLLAQDGYHELIKTLEHMFDTTITSGSEMEEVLLHQPERWHVLTYEDEEGDLIMVGDIPWEMFLSTVRRLRIARVDAIGC 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0312 172 Pfam AUX/IAA family 69 169 IPR033389 -
Acco06g0312 172 Gene3D - 70 171 - -
Acco06g0312 172 ProSiteProfiles PB1 domain profile. 76 169 IPR000270 GO:0005515
Acco06g0312 172 MobiDBLite consensus disorder prediction 45 69 - -
Acco06g0312 172 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 65 167 IPR003311 GO:0005634|GO:0006355
Acco06g0312 172 SUPERFAMILY CAD & PB1 domains 67 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0312 Acco-ChrAcco06 1957719 1958546 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0312 80 164 B3 DNA Binding Superfamily AT1G59750 40.000 8.84e-15 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Acco06g0312 AUX_IAA 3.6e-31 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g0354 02 2605915 2608796 Acco06g0312 06 1957719 1958546 CCT
Acco06g0312 06 1957719 1958546 Acco06g0312 06 1957719 1958546 ECH