Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0311 ATGGCAGAGAAGCCGACTGAGTCCATCCTCCCAGGAATCACAGCCTCCCATCTTGCTTCCACGTTCGGCACTGATTTTGTTGAGCTGGTTTGGCAAAATGGCCAAATTCTGGTGCAAGGAGGGTCATCGAGTAGAACAATGAAGAGGCCTTCTTGCTTTGGTTATGAAGCTTACGACAAAGATCACTGCATAGCAAAACGGGCAAGGTTAAATACCTTACACTCGCTTTTGGACTCTTCCCATCAAAATCCCCGACAAACCAACGACCCATGTTCCTATCAGTTTGATTTTAGTAATAAGCATGGGGATGAATTTTCCAATTTGATAACAGAAAGAGAATCTAACTCCAAGCCCAATGGGGGGAGTACTCAGTTATGCCCAACTTCCTTGCAGACCCATAAGCATGGCTTGGGATCTGATGAAAGGGTTCAAAATATTAATTTCTCCAACTTCTTGAGACCTGCATTGCTTTTCAAATCTACTTATCAGGGAAACAGTGCAAGTCGACACTCAAGCAGATTGGAGGAGATCAAAGCAACTGATGGTGGTAGCAGTAAAGCGCTCGATCATTCCGTTGTGATTGACTCGGCTAAGGGATTACGTAGTCTCAAGTACGGAGTTCATCCTGGCCAAACAGCTTTTACTTCCAATAAAGCAAAGCCAACAACACCCTTGGATGGAAAAAAGGATCAGGATGCACTACTCCCTGATGAACAATCCGAAGCTGTTGGATGCGGTAGGGCCCTCAGGAGTCAGGGATCACATGGTCAACGTCATCATCAAACACACAGTAGAAAAGGAAAAATGACTGTTGAGTTTTCTCCTGCATCCTTGGTAGCATCTTCTTCTTTGTGCTCGCTTGGAGCCTCCAATGATCCTACTCTCCCTAGTAGGAAACACGAGGACACCGACGACTCAGCCTCTACAAGTGATAGTGACGAAGAAACAGAAGATACGACGCCAAAGGAAACGCCGGCTCAAGATGGTTCAAGAGGCAAGAGAATCAGAAACACGCAGATGTATAATTTATCGAAGAGGAAACAACGAGATAAGATTAACAAGAGGATGCGCGCATTAAAACAACTAATACCTAATTGCAGTAAGGTGGACAAGGCTTCAATGCTGGACGATGCCATCGATTATCTGAAGGCCCTCAAGCTTCAGTTGCAGGTATTATCAATGGGAAGTGGGATTTGTATGCCTCCAATGATGTCGATGTTAGGCATAGGCATCCCTAGCAGCCTACCTCATCATCAGTTTCTTCCACAAATGATTCCAGCAGGTTTTCCCAATCACGTCCTTCCCAATATTCAATTCCCAATGATGTCTCAACAATCACCTTTCGTTTCCATGCCTCTCAAGCCTATCCAACCCTATCTCTTTTCCCATTTCTCCACTTTTGATCATCACGACTCTGATCTTAACGCGCAGCCGCCTGTTTCTGCAGCTATGCCAAAAGTTACTCAGGGATCGAAGTGA 1479 0.4523 MAEKPTESILPGITASHLASTFGTDFVELVWQNGQILVQGGSSSRTMKRPSCFGYEAYDKDHCIAKRARLNTLHSLLDSSHQNPRQTNDPCSYQFDFSNKHGDEFSNLITERESNSKPNGGSTQLCPTSLQTHKHGLGSDERVQNINFSNFLRPALLFKSTYQGNSASRHSSRLEEIKATDGGSSKALDHSVVIDSAKGLRSLKYGVHPGQTAFTSNKAKPTTPLDGKKDQDALLPDEQSEAVGCGRALRSQGSHGQRHHQTHSRKGKMTVEFSPASLVASSSLCSLGASNDPTLPSRKHEDTDDSASTSDSDEETEDTTPKETPAQDGSRGKRIRNTQMYNLSKRKQRDKINKRMRALKQLIPNCSKVDKASMLDDAIDYLKALKLQLQVLSMGSGICMPPMMSMLGIGIPSSLPHHQFLPQMIPAGFPNHVLPNIQFPMMSQQSPFVSMPLKPIQPYLFSHFSTFDHHDSDLNAQPPVSAAMPKVTQGSK 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0311 492 PANTHER TRANSCRIPTION FACTOR PIF3 13 81 IPR044273 GO:0003700|GO:0006355
Acco06g0311 492 CDD bHLH_AtPIF_like 336 398 IPR047265 -
Acco06g0311 492 MobiDBLite consensus disorder prediction 111 136 - -
Acco06g0311 492 Gene3D - 328 386 IPR036638 GO:0046983
Acco06g0311 492 MobiDBLite consensus disorder prediction 285 338 - -
Acco06g0311 492 SMART finulus 342 391 IPR011598 GO:0046983
Acco06g0311 492 MobiDBLite consensus disorder prediction 111 134 - -
Acco06g0311 492 Pfam Helix-loop-helix DNA-binding domain 346 385 IPR011598 GO:0046983
Acco06g0311 492 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 338 396 IPR036638 GO:0046983
Acco06g0311 492 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 336 385 IPR011598 GO:0046983
Acco06g0311 492 MobiDBLite consensus disorder prediction 208 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0311 Acco-ChrAcco06 1946184 1949010 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0311 146 452 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 30.769 2.12e-29 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco06g0311 HLH 6.3e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco06g0311 06 1946184 1949010 Acco06g0311 06 1946184 1949010 ECH