Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0309 ATGGGGAGGCACTCTTGCTGCTATAAGCAGAAGCTTCGCAAGGGTCTCTGGTCCCCCGACGAGGATGAAAAACTTTTGAGACATGTTACCGAGTTTGGCCATGGCAGCTGGAGCTCTGTTCCTAAGCTAGCCGGCCTGCAGAGGTGTGGTAAGAGCTGTCGGCTGAGGTGGATCAATTACCTGCGGCCTGATTTGAAGAGAGGAACATTCTCCCAGGAAGAAGAAAACCTTATCATTGAACTTCACGCTGTGTTGGGAAATAGGTGGTCTCAAATTGCGGCGCAATTGCCCGGAAGAACTGATAATGAAATAAAGAATCTGTGGAATTCTTGCTTGAAGAAGAAACTGAAGCAGAGAGGCATCGACCCTGTTACCCACAAACCACTCTCTGAGGTTCAAAACGGAGACGACAAAGACAAAGAGGTCGATGAATTGCAACTCCTCAAATCAGAAAGCCCCAGTTCAGATGCCACAAAAGCCTATTCCAGTTTCAAGTACAACAATGGCACAAGTAACACCAATTTGCCAACCAACTGCAGCAGCAAAGAATTGCTCCCAGATGGGTTTACAACGAGCTACACCACTTCAGGGCTGATGGGTAATCTCCCACTTGAGATGAATTATGCATCCACTTCTGATACCTTCTCTTCTAATTCAAATCCTTCCCAATGGTTCACCCAAACAGAAAGACCAATATTCCATATGAACTCTGAATTTGCTTCTAATTCCATTTCTACTGCTCTTGCGCCTTCACAAACTTCATATCTTGGTGTTCCCTGCGACGATATTTGCGCACCTTCTTATGCTGAGAATGCATCTCAATCTCATTTCTGGGGATTGACAGATTCTGCAAAAGAGACCCAAATTCAAGTGCTGCAAAACCAAACAGAGGAAGCCAAGTGGGGCAATTACGTTCAAAACCCAATCTTAATGCTGCCCGCGACTCATCTGGTAACTGATAATTTTGGGGTCATGTTGCCCCCTAACAAGCAGCAAGAAGAACCTTCACAGACTAGTAATATGTTTTCCAAGGACATCCAGAAGCTCACGGCTGCGTTTGGACAGGTATAG 1071 0.4575 MGRHSCCYKQKLRKGLWSPDEDEKLLRHVTEFGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLKQRGIDPVTHKPLSEVQNGDDKDKEVDELQLLKSESPSSDATKAYSSFKYNNGTSNTNLPTNCSSKELLPDGFTTSYTTSGLMGNLPLEMNYASTSDTFSSNSNPSQWFTQTERPIFHMNSEFASNSISTALAPSQTSYLGVPCDDICAPSYAENASQSHFWGLTDSAKETQIQVLQNQTEEAKWGNYVQNPILMLPATHLVTDNFGVMLPPNKQQEEPSQTSNMFSKDIQKLTAAFGQV 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0309 356 Gene3D - 68 144 - -
Acco06g0309 356 FunFam Myb transcription factor 11 67 - -
Acco06g0309 356 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Acco06g0309 356 SMART sant 66 114 IPR001005 -
Acco06g0309 356 SMART sant 13 63 IPR001005 -
Acco06g0309 356 CDD SANT 17 61 IPR001005 -
Acco06g0309 356 PANTHER MYB DOMAIN PROTEIN 55 1 273 - -
Acco06g0309 356 Gene3D - 14 66 - -
Acco06g0309 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Acco06g0309 356 CDD SANT 69 109 IPR001005 -
Acco06g0309 356 FunFam MYB transcription factor 68 140 - -
Acco06g0309 356 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Acco06g0309 356 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Acco06g0309 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Acco06g0309 356 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Acco06g0309 356 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0309 Acco-ChrAcco06 1928642 1929903 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0309 1 146 MYB Transcription Factor Family AT4G01680 85.034 5.24e-91 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco06g0309 Myb_DNA-binding 5.9e-14 CL0123