Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Acco06g0292 | ATGTCTTCTGTAATAGGCGTTTCGTCTATATACCAGACTCCGTCTCTGGAACTTTATAGAAGAGCTACAACATCAATAGGTGCTACCACCTCCCTTTCGTTCCAATTTTCTGGCAACAAGTCCCACTTTAACGACTTTCTTCTGAGAGCCCACCTCAGTAACAATGGCTGTGGAAATTTGAAGAGTGGGGCTAAACCTAGAGCTAGCTTTGTTCCTTCTTCCATTGCCTCGCCCAATTCTTCCGTTCTGAGTGAAGAAGCGTTCAAGGGCTTAGGCGGGGGTTTCTCCGACGAAGACCCTTTGGATGATCTTACTGAAAACGATGACTATGGCTATGACTCTGAAACTGAGGCTTCTTCAGCTGTCGACAGTGGGGAGGAGCTCGACATTTCCAAGCTGGGCTTGCCTTCGCGCCTTGTGGAATCACTCCAGCAACGTGGGATTACTCATCTTTTCCCCATTCAGAGAGCTGTTTTAGTGCCGGCCCTCCAAGGTCGAGATCTTATTGCCCGAGCAAAGACTGGGACTGGAAAGACATTAGCATTTGGCATTCCAATTATCAGAGGACTCACCGACGATGAACAAAGAACCTTCCAGAGACGATCTGGTCGTCTTCCCCGAGTATTGGTCCTTGCTCCTACCAGGGAGTTGGCAAGGCAAGTGGAGAAAGAGATAAAAGAATCTGCACCCTATTTGAGCACAGTTTGTGTTTATGGGGGCGTTTCTTATGTTACCCAACAAAATGCACTTTCTCGTGGTGTTGATGTAGTGGTTGGAACACCTGGGAGAATAATTGACCTGATAAACGGGAACAGTCTTAAACTGAGTGAAGTGAAGTATTTGGTCCTTGATGAGGCTGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTAGAAATAATTTTACAGAAACTACCATCTGAACGACAGAGCATGCTTTTTTCTGCTACCATGCCTGGCTGGGTGAAGAAACTTGCCAGGAAATATTTGGACGATCCATTGACAATTGATTTGGTTGGGGAAAAAGAGGAAAAACTTGCGGAAGGGATCAAACTTTATGCAATATCAGCCACCACTACTTCTAAGCGGACAATGCTTTCTGATCTCATAACGGTTTATGCAAAGGGTGGAAAGACTATTGTTTTTACCCAGACAAAAAGAGATGCCGATGAAGTATCATTGGCATTAACAAATAGCATACCTTCTGAGGCACTGCATGGCGATATATCTCAGCATCAGAGAGAGAGAACATTGAATGGATTTCGGCAAGGGAAATTCACAGTTCTTGTTGCCACTGATGTAGCAGCACGTGGACTTGATATTCCTAATGTTGATTTGGTTATTCACTATGAACTTCCCAATGACCCTGAGACATTTGTACATCGCTCTGGTCGTACTGGGCGTGCTGGAAAGGAAGGTACTGCCCTTTTGATGTACACCAGTAACCAGAGGAGAACAGTTAGGTCTCTTGAGCGTGATGTAGGCTGTAAACTTGAATTTATTACTCCGCCAGCTATAAATGATGTATTGGAATCATCGGCTGACCAAGTGGTTGCCACACTTAATAGAGTGCATCCTGAATCTGTTGCGTTTTTCACCCTTACTGCACAAAAATTGATTGAGGAACAAGGAACAAGTGCCCTTGCAGCTGCATTGGCACAACTAAGTGGATTTTCAAAACCTCCCTCATCCCGGTCTCTTATCAACCACGAGCAGGGATGGGTTACTTTACAACTGACTCGAGATGAAGGAGATGCTAGAAGGTTTTTGTCTGCAAGATCGGTCACTGGGTTTCTTTCTGATGTTTATCCTCCAGCTGCTGATGAAGTTGGAAAAATACATATAATTGCAGATGAAAGGGTTCAAGGGGCCGTTTTCGATGTGCCAGAGGAGATTGCTAGAGAGTTATTGAACAAGGAAATACCACCTGGCAACACTATTTCCAAGATCACTAAGTTGCCTCCTTTACAAGATGATGGACCTCCCGGTGATTTCTATGGGAGGTTTTCTGACAGAGATCGTAGAGGTTCTAGGGATCGGCGAGGTTTTAAAACCTCACAGAGATGGGATGGGGGCAATGATTCTGGTGATGAATTTGGTCATTCATATAGAAGAGGTGGTCGAAGTTTTAGACTCGGCAATAGCTGGTCTCAAAGGGCAAGAAACAGTGGAGGCTTTGATGAATTTGGTGATACAAATAGGAGAGGTGGTCGAAGTAACTCAAGTAATAGAAGACCATTCAGGTCTTCATCGTCAGACAGAAGCTTTGGAGGGGCTTGTTTTAACTGTGGGCAATCTGGACATCGTGCATCTGAATGTCCCAACAAACTTGGCTTCTAA | 2340 | 0.4487 | MSSVIGVSSIYQTPSLELYRRATTSIGATTSLSFQFSGNKSHFNDFLLRAHLSNNGCGNLKSGAKPRASFVPSSIASPNSSVLSEEAFKGLGGGFSDEDPLDDLTENDDYGYDSETEASSAVDSGEELDISKLGLPSRLVESLQQRGITHLFPIQRAVLVPALQGRDLIARAKTGTGKTLAFGIPIIRGLTDDEQRTFQRRSGRLPRVLVLAPTRELARQVEKEIKESAPYLSTVCVYGGVSYVTQQNALSRGVDVVVGTPGRIIDLINGNSLKLSEVKYLVLDEADQMLAVGFEEDVEIILQKLPSERQSMLFSATMPGWVKKLARKYLDDPLTIDLVGEKEEKLAEGIKLYAISATTTSKRTMLSDLITVYAKGGKTIVFTQTKRDADEVSLALTNSIPSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTALLMYTSNQRRTVRSLERDVGCKLEFITPPAINDVLESSADQVVATLNRVHPESVAFFTLTAQKLIEEQGTSALAAALAQLSGFSKPPSSRSLINHEQGWVTLQLTRDEGDARRFLSARSVTGFLSDVYPPAADEVGKIHIIADERVQGAVFDVPEEIARELLNKEIPPGNTISKITKLPPLQDDGPPGDFYGRFSDRDRRGSRDRRGFKTSQRWDGGNDSGDEFGHSYRRGGRSFRLGNSWSQRARNSGGFDEFGDTNRRGGRSNSSNRRPFRSSSSDRSFGGACFNCGQSGHRASECPNKLGF | 779 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Acco06g0292 | 779 | Pfam | Zinc knuckle | 759 | 775 | IPR001878 | GO:0003676|GO:0008270 | |
Acco06g0292 | 779 | Pfam | Helicase conserved C-terminal domain | 363 | 470 | IPR001650 | - | |
Acco06g0292 | 779 | ProSiteProfiles | Zinc finger CCHC-type profile. | 760 | 775 | IPR001878 | GO:0003676|GO:0008270 | |
Acco06g0292 | 779 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 365 | 510 | IPR001650 | - | |
Acco06g0292 | 779 | SMART | helicmild6 | 390 | 470 | IPR001650 | - | |
Acco06g0292 | 779 | Gene3D | - | 351 | 551 | IPR027417 | - | |
Acco06g0292 | 779 | PANTHER | ATP-DEPENDENT RNA HELICASE RHLE-RELATED | 116 | 668 | - | - | |
Acco06g0292 | 779 | MobiDBLite | consensus disorder prediction | 735 | 754 | - | - | |
Acco06g0292 | 779 | MobiDBLite | consensus disorder prediction | 99 | 113 | - | - | |
Acco06g0292 | 779 | SMART | ultradead3 | 147 | 353 | IPR014001 | - | |
Acco06g0292 | 779 | CDD | DEADc | 139 | 337 | - | - | |
Acco06g0292 | 779 | Gene3D | - | 129 | 340 | IPR027417 | - | |
Acco06g0292 | 779 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 159 | 336 | IPR014001 | - | |
Acco06g0292 | 779 | Pfam | GUCT (NUC152) domain | 557 | 657 | IPR012562 | GO:0003723|GO:0004386|GO:0005524 | |
Acco06g0292 | 779 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 206 | 491 | IPR027417 | - | |
Acco06g0292 | 779 | CDD | GUCT_Hera | 564 | 644 | - | - | |
Acco06g0292 | 779 | MobiDBLite | consensus disorder prediction | 93 | 125 | - | - | |
Acco06g0292 | 779 | SMART | c2hcfinal6 | 759 | 775 | IPR001878 | GO:0003676|GO:0008270 | |
Acco06g0292 | 779 | Pfam | DEAD/DEAH box helicase | 152 | 325 | IPR011545 | GO:0003676|GO:0005524 | |
Acco06g0292 | 779 | FunFam | Nucleolar RNA helicase II | 358 | 548 | - | - | |
Acco06g0292 | 779 | SUPERFAMILY | Retrovirus zinc finger-like domains | 742 | 777 | IPR036875 | GO:0003676|GO:0008270 | |
Acco06g0292 | 779 | Gene3D | - | 749 | 778 | - | - | |
Acco06g0292 | 779 | FunFam | ATP-dependent RNA helicase RhlE | 120 | 339 | - | - | |
Acco06g0292 | 779 | MobiDBLite | consensus disorder prediction | 665 | 687 | - | - | |
Acco06g0292 | 779 | MobiDBLite | consensus disorder prediction | 643 | 754 | - | - | |
Acco06g0292 | 779 | CDD | SF2_C_DEAD | 350 | 479 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Acco06g0292 | Acco-ChrAcco06 | 1832671 | 1837767 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Acco06g0292 | 142 | 510 | Eukaryotic Initiation Factors Gene Family | AT1G72730 | 37.037 | 5.50e-64 | 218 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Acco06g0292 | 06 | 1832671 | 1837767 | Acco06g0292 | 06 | 1832671 | 1837767 | ECH |