Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0292 ATGTCTTCTGTAATAGGCGTTTCGTCTATATACCAGACTCCGTCTCTGGAACTTTATAGAAGAGCTACAACATCAATAGGTGCTACCACCTCCCTTTCGTTCCAATTTTCTGGCAACAAGTCCCACTTTAACGACTTTCTTCTGAGAGCCCACCTCAGTAACAATGGCTGTGGAAATTTGAAGAGTGGGGCTAAACCTAGAGCTAGCTTTGTTCCTTCTTCCATTGCCTCGCCCAATTCTTCCGTTCTGAGTGAAGAAGCGTTCAAGGGCTTAGGCGGGGGTTTCTCCGACGAAGACCCTTTGGATGATCTTACTGAAAACGATGACTATGGCTATGACTCTGAAACTGAGGCTTCTTCAGCTGTCGACAGTGGGGAGGAGCTCGACATTTCCAAGCTGGGCTTGCCTTCGCGCCTTGTGGAATCACTCCAGCAACGTGGGATTACTCATCTTTTCCCCATTCAGAGAGCTGTTTTAGTGCCGGCCCTCCAAGGTCGAGATCTTATTGCCCGAGCAAAGACTGGGACTGGAAAGACATTAGCATTTGGCATTCCAATTATCAGAGGACTCACCGACGATGAACAAAGAACCTTCCAGAGACGATCTGGTCGTCTTCCCCGAGTATTGGTCCTTGCTCCTACCAGGGAGTTGGCAAGGCAAGTGGAGAAAGAGATAAAAGAATCTGCACCCTATTTGAGCACAGTTTGTGTTTATGGGGGCGTTTCTTATGTTACCCAACAAAATGCACTTTCTCGTGGTGTTGATGTAGTGGTTGGAACACCTGGGAGAATAATTGACCTGATAAACGGGAACAGTCTTAAACTGAGTGAAGTGAAGTATTTGGTCCTTGATGAGGCTGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTAGAAATAATTTTACAGAAACTACCATCTGAACGACAGAGCATGCTTTTTTCTGCTACCATGCCTGGCTGGGTGAAGAAACTTGCCAGGAAATATTTGGACGATCCATTGACAATTGATTTGGTTGGGGAAAAAGAGGAAAAACTTGCGGAAGGGATCAAACTTTATGCAATATCAGCCACCACTACTTCTAAGCGGACAATGCTTTCTGATCTCATAACGGTTTATGCAAAGGGTGGAAAGACTATTGTTTTTACCCAGACAAAAAGAGATGCCGATGAAGTATCATTGGCATTAACAAATAGCATACCTTCTGAGGCACTGCATGGCGATATATCTCAGCATCAGAGAGAGAGAACATTGAATGGATTTCGGCAAGGGAAATTCACAGTTCTTGTTGCCACTGATGTAGCAGCACGTGGACTTGATATTCCTAATGTTGATTTGGTTATTCACTATGAACTTCCCAATGACCCTGAGACATTTGTACATCGCTCTGGTCGTACTGGGCGTGCTGGAAAGGAAGGTACTGCCCTTTTGATGTACACCAGTAACCAGAGGAGAACAGTTAGGTCTCTTGAGCGTGATGTAGGCTGTAAACTTGAATTTATTACTCCGCCAGCTATAAATGATGTATTGGAATCATCGGCTGACCAAGTGGTTGCCACACTTAATAGAGTGCATCCTGAATCTGTTGCGTTTTTCACCCTTACTGCACAAAAATTGATTGAGGAACAAGGAACAAGTGCCCTTGCAGCTGCATTGGCACAACTAAGTGGATTTTCAAAACCTCCCTCATCCCGGTCTCTTATCAACCACGAGCAGGGATGGGTTACTTTACAACTGACTCGAGATGAAGGAGATGCTAGAAGGTTTTTGTCTGCAAGATCGGTCACTGGGTTTCTTTCTGATGTTTATCCTCCAGCTGCTGATGAAGTTGGAAAAATACATATAATTGCAGATGAAAGGGTTCAAGGGGCCGTTTTCGATGTGCCAGAGGAGATTGCTAGAGAGTTATTGAACAAGGAAATACCACCTGGCAACACTATTTCCAAGATCACTAAGTTGCCTCCTTTACAAGATGATGGACCTCCCGGTGATTTCTATGGGAGGTTTTCTGACAGAGATCGTAGAGGTTCTAGGGATCGGCGAGGTTTTAAAACCTCACAGAGATGGGATGGGGGCAATGATTCTGGTGATGAATTTGGTCATTCATATAGAAGAGGTGGTCGAAGTTTTAGACTCGGCAATAGCTGGTCTCAAAGGGCAAGAAACAGTGGAGGCTTTGATGAATTTGGTGATACAAATAGGAGAGGTGGTCGAAGTAACTCAAGTAATAGAAGACCATTCAGGTCTTCATCGTCAGACAGAAGCTTTGGAGGGGCTTGTTTTAACTGTGGGCAATCTGGACATCGTGCATCTGAATGTCCCAACAAACTTGGCTTCTAA 2340 0.4487 MSSVIGVSSIYQTPSLELYRRATTSIGATTSLSFQFSGNKSHFNDFLLRAHLSNNGCGNLKSGAKPRASFVPSSIASPNSSVLSEEAFKGLGGGFSDEDPLDDLTENDDYGYDSETEASSAVDSGEELDISKLGLPSRLVESLQQRGITHLFPIQRAVLVPALQGRDLIARAKTGTGKTLAFGIPIIRGLTDDEQRTFQRRSGRLPRVLVLAPTRELARQVEKEIKESAPYLSTVCVYGGVSYVTQQNALSRGVDVVVGTPGRIIDLINGNSLKLSEVKYLVLDEADQMLAVGFEEDVEIILQKLPSERQSMLFSATMPGWVKKLARKYLDDPLTIDLVGEKEEKLAEGIKLYAISATTTSKRTMLSDLITVYAKGGKTIVFTQTKRDADEVSLALTNSIPSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTALLMYTSNQRRTVRSLERDVGCKLEFITPPAINDVLESSADQVVATLNRVHPESVAFFTLTAQKLIEEQGTSALAAALAQLSGFSKPPSSRSLINHEQGWVTLQLTRDEGDARRFLSARSVTGFLSDVYPPAADEVGKIHIIADERVQGAVFDVPEEIARELLNKEIPPGNTISKITKLPPLQDDGPPGDFYGRFSDRDRRGSRDRRGFKTSQRWDGGNDSGDEFGHSYRRGGRSFRLGNSWSQRARNSGGFDEFGDTNRRGGRSNSSNRRPFRSSSSDRSFGGACFNCGQSGHRASECPNKLGF 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0292 779 Pfam Zinc knuckle 759 775 IPR001878 GO:0003676|GO:0008270
Acco06g0292 779 Pfam Helicase conserved C-terminal domain 363 470 IPR001650 -
Acco06g0292 779 ProSiteProfiles Zinc finger CCHC-type profile. 760 775 IPR001878 GO:0003676|GO:0008270
Acco06g0292 779 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 365 510 IPR001650 -
Acco06g0292 779 SMART helicmild6 390 470 IPR001650 -
Acco06g0292 779 Gene3D - 351 551 IPR027417 -
Acco06g0292 779 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 116 668 - -
Acco06g0292 779 MobiDBLite consensus disorder prediction 735 754 - -
Acco06g0292 779 MobiDBLite consensus disorder prediction 99 113 - -
Acco06g0292 779 SMART ultradead3 147 353 IPR014001 -
Acco06g0292 779 CDD DEADc 139 337 - -
Acco06g0292 779 Gene3D - 129 340 IPR027417 -
Acco06g0292 779 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 159 336 IPR014001 -
Acco06g0292 779 Pfam GUCT (NUC152) domain 557 657 IPR012562 GO:0003723|GO:0004386|GO:0005524
Acco06g0292 779 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 206 491 IPR027417 -
Acco06g0292 779 CDD GUCT_Hera 564 644 - -
Acco06g0292 779 MobiDBLite consensus disorder prediction 93 125 - -
Acco06g0292 779 SMART c2hcfinal6 759 775 IPR001878 GO:0003676|GO:0008270
Acco06g0292 779 Pfam DEAD/DEAH box helicase 152 325 IPR011545 GO:0003676|GO:0005524
Acco06g0292 779 FunFam Nucleolar RNA helicase II 358 548 - -
Acco06g0292 779 SUPERFAMILY Retrovirus zinc finger-like domains 742 777 IPR036875 GO:0003676|GO:0008270
Acco06g0292 779 Gene3D - 749 778 - -
Acco06g0292 779 FunFam ATP-dependent RNA helicase RhlE 120 339 - -
Acco06g0292 779 MobiDBLite consensus disorder prediction 665 687 - -
Acco06g0292 779 MobiDBLite consensus disorder prediction 643 754 - -
Acco06g0292 779 CDD SF2_C_DEAD 350 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0292 Acco-ChrAcco06 1832671 1837767 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0292 142 510 Eukaryotic Initiation Factors Gene Family AT1G72730 37.037 5.50e-64 218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco06g0292 06 1832671 1837767 Acco06g0292 06 1832671 1837767 ECH