Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0286 ATGGGGATAAAGGGTTTAACAAAGCTTTTAACGGATAATGCCCCAAAAGCTGTAAAGGCGCGTAGCTTCCAAAGCTATTCTGGCCGCAAGATTGCCATTGACGCTAGCATGAGCATTTATCAGTTCCTTGTTGTCGTGGGAAGAAGTGGGACTGAGATGCTCACTAACGAGGCTGGTGAAGTAACTAGTCATTTGCTAGGCATGTTTACCCGGACAGTCAGACTTCTAGAAGCCGGAATGGAGCCAGTATATGTTTTTGATGGGAAGCCGCCTGATCTGAAGAGGCAGGAGATGGCTAAACGGTATTCAAAGAGGGATGAAGCTTATGAGGATTTATCAGAGGCCATTGAGACTGGCAATGAGGAAGACATCGAAAAATTCAGTAAACGGACAGTCAAGATGACAGAACAACATAGTGAAGGTTGTAAAAGACTTTTGTCACTCATGGGGGTGCCTGTTATTGAGGCGCCATCCGAAGCTGAAGCACAGTGTGCTGCACTTTGCAAATCTGGAAAGGTTTATGCTGTGGCTTCTGAAGACATGGATTCATTAACGTTTGGAGCTCCTATATTTCTTCGCCATTTAATGGTTTCTAGCCCAAAGAAAGTTCCAGTTATGGAATTTGAAGTTGCCAAGATATTGGAGGAGCTAAATCTGACCATGGATCAGTTTATTGACTTGTGTATTCTTTCTGGGTGTGATTATTGTGGAAGCATTCGAGGTATTGGTGGCAAGACCGCTTTGAAGCTCATTCATCAGCATAGCTGTATAGAGAACATATTGAAGATCATAAATAAAGAGAGGTACCTTATACCAGATGATTGGCCATATCAGGAGGTTAGGCAGCTTTTTAAGGAACCAACAGTCTTAGCTGAAGAAAAGCAACCAGATCTCAAGTGGACTGCTCCCAATGAAGAAGGTTTAATGACATTTCTGGTAAATGAGAATGGATTCAACAGAGATAGGGTGACAAAGGCGATGGAAAAAATTAAAGCTGCAAGGATCATGTCATCACAAGGCCAATCAGAATCTGCTTTTAAGCCATTGGCTAACTATTCTACACCCATTAAACGGAAGGGGAGCAAGTGCATGCTTAGATCCTTTAAACCAGCGACTAAGTGTAATATGTTATCCCCACAACTTTATAACTGGTCAAGGCCCATGGTTCTCGGCAACCTGAGCATTGCCTCCGCAGTAAAACAATATTCTTTCCGAACTCCCAAATTCTCTATATTCGGTGGTCCATGTCTTGACGGGAGCTTTATTTCTTCTTTTGACAGTAAACACCAGTGGATGCTGCTGAACAAACTGTCAAAGAGACGAAGTCTGGTGGCGGCGGGAGAAGAAAGAACTAGCTTCGTCTTGTGA 1368 0.4327 MGIKGLTKLLTDNAPKAVKARSFQSYSGRKIAIDASMSIYQFLVVVGRSGTEMLTNEAGEVTSHLLGMFTRTVRLLEAGMEPVYVFDGKPPDLKRQEMAKRYSKRDEAYEDLSEAIETGNEEDIEKFSKRTVKMTEQHSEGCKRLLSLMGVPVIEAPSEAEAQCAALCKSGKVYAVASEDMDSLTFGAPIFLRHLMVSSPKKVPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCGSIRGIGGKTALKLIHQHSCIENILKIINKERYLIPDDWPYQEVRQLFKEPTVLAEEKQPDLKWTAPNEEGLMTFLVNENGFNRDRVTKAMEKIKAARIMSSQGQSESAFKPLANYSTPIKRKGSKCMLRSFKPATKCNMLSPQLYNWSRPMVLGNLSIASAVKQYSFRTPKFSIFGGPCLDGSFISSFDSKHQWMLLNKLSKRRSLVAAGEERTSFVL 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0286 455 SMART HhH_4 221 254 IPR008918 GO:0003677|GO:0003824
Acco06g0286 455 SMART xpgn3 1 108 IPR006085 GO:0004518
Acco06g0286 455 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 167 187 IPR006084 -
Acco06g0286 455 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 224 239 IPR006084 -
Acco06g0286 455 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Acco06g0286 455 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Acco06g0286 455 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Acco06g0286 455 SUPERFAMILY PIN domain-like 2 234 IPR029060 -
Acco06g0286 455 CDD PIN_FEN1 4 332 - -
Acco06g0286 455 Pfam XPG I-region 150 234 IPR006086 GO:0004518
Acco06g0286 455 CDD H3TH_FEN1-Euk 222 290 - -
Acco06g0286 455 SMART xpgineu 147 219 IPR006086 GO:0004518
Acco06g0286 455 Hamap Flap endonuclease 1 [fen]. 1 347 IPR023426 GO:0016788
Acco06g0286 455 Gene3D - 2 218 - -
Acco06g0286 455 FunFam Flap endonuclease 1 10 222 - -
Acco06g0286 455 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 348 IPR006084 -
Acco06g0286 455 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 219 353 IPR036279 -
Acco06g0286 455 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788
Acco06g0286 455 Gene3D - 219 286 - -
Acco06g0286 455 FunFam Flap endonuclease 1 219 286 - -
Acco06g0286 455 Pfam XPG N-terminal domain 1 108 IPR006085 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0286 Acco-ChrAcco06 1808618 1813273 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0286 1 384 Core DNA Replication Machinery Family AT5G26680 74.219 0.0 605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco06g0286 06 1808618 1813273 Acco06g0286 06 1808618 1813273 ECH