Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0250 ATGCTGCCGTCGTGTCTCGAGGCGGAAAGTTCAATGGGGTTTCTTTGTGTGGTCATTAGTTTGGTAAACAAACCCTTGCCACTTTCCCTACCTATGAGCATAGAGCTCAGTCTCCAACCAGACACCCAGAAAGAGAAGGAGGCCAAGAGGGTGATCGGATTTCTTCACATTTGCTCCAGCATGCGAGGCTACACGAGAAGGAGTTCCAAGGCTAACATCATGGCCCCTCAAATCGAACCCGCTGGTGCTCCAAAACAGGGCCCCTCTATTGATTCCGACACTTTTTATCACAAACTCAAGCAAGTGTGGGACTCCTACGGACTTGGTCTAATTGTAAATGCCCGAGAAACTTCGCTGGACTTGTTCCTCTTCTACTCGGAGGTGACCAGAAGAGGAGGTTATCATCAGGTCAGTGGAGACAAGAAATGGGATGAACTTGTTTCTGCCTTAAAGTTGGAAGGCAGTGAGGCAAACTTACCTGTTCAGCTTGAAAAGTGCTACGCTCTGCTTCTTTACCAGTTTGAGCAACTCTACCACTACAGGGATCCAACACATAAAGCTGCGACTAACCCCACCTTAGGTCTGCTCACAAATTCCATAAGCTCAGAGAGGAAGCGTAAATATGAGGTTAGATTGTTTGAATTTGTCGACGACGAAGATGGCGAGGTGGAGATAGGCACGTGCAAGGAAATGAGAGGGAGCGAGCTTGAAGAACAGAAAATGGTGGTATACACAACCCCAGATGACAAGAAAGTGAAGAAACGCCGAGGTGCTCCACAGGGACATAAAACTGCATATCAGATATTCATCAAGCAGGAATGCGCTCGGCTGAGAAGTTGTAAGGAAGCATCTGATCGCTCAAATATTCTCTACACGGCCATTGATGCATGGAGGAATATGACTGAGACTGAGAAACAGCCTTTTGTGGAAGAAAGCAGGAAGGAAAGGGAAAGGCTGATGGAAGGAAGGAAAGCTCAAGATCAGAATGTTAAGGCAGAAACTGATGCAGAGAACTGCAGTGATGGCTTAGAGCTTATAATGAGCGAAGAATCAGAATCTGAAGCGCCATTAACTGTTGACATGGGATGCATACCGGGTAGAGCATGA 1107 0.4697 MLPSCLEAESSMGFLCVVISLVNKPLPLSLPMSIELSLQPDTQKEKEAKRVIGFLHICSSMRGYTRRSSKANIMAPQIEPAGAPKQGPSIDSDTFYHKLKQVWDSYGLGLIVNARETSLDLFLFYSEVTRRGGYHQVSGDKKWDELVSALKLEGSEANLPVQLEKCYALLLYQFEQLYHYRDPTHKAATNPTLGLLTNSISSERKRKYEVRLFEFVDDEDGEVEIGTCKEMRGSELEEQKMVVYTTPDDKKVKKRRGAPQGHKTAYQIFIKQECARLRSCKEASDRSNILYTAIDAWRNMTETEKQPFVEESRKERERLMEGRKAQDQNVKAETDAENCSDGLELIMSEESESEAPLTVDMGCIPGRA 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0250 368 Gene3D High mobility group box domain 249 340 IPR036910 -
Acco06g0250 368 Pfam HMG-box domain 259 319 IPR009071 -
Acco06g0250 368 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 259 327 IPR009071 -
Acco06g0250 368 Gene3D - 75 192 IPR036431 GO:0003677
Acco06g0250 368 CDD ARID 91 175 - -
Acco06g0250 368 SUPERFAMILY HMG-box 242 320 IPR036910 -
Acco06g0250 368 SUPERFAMILY ARID-like 90 184 IPR036431 GO:0003677
Acco06g0250 368 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 252 322 - -
Acco06g0250 368 CDD HMG-box_SF 263 318 - -
Acco06g0250 368 ProSiteProfiles ARID domain profile. 89 179 IPR001606 GO:0003677
Acco06g0250 368 SMART ARID_2 86 175 - -
Acco06g0250 368 Pfam ARID/BRIGHT DNA binding domain 92 175 IPR001606 GO:0003677
Acco06g0250 368 MobiDBLite consensus disorder prediction 348 368 - -
Acco06g0250 368 SMART bright_3 90 180 IPR001606 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0250 118 344 ARID Transcription Factor Family AT1G55650 25.911 5.57e-17 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Acco06g0250 ARID 2.4e-12 CL0123