Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0247 ATGAACAAAGAAGGGCTGGGTTGCCATAATTCTTTGGTTCGTAAAAATGGTCTGCTCACTCCGGACGACGGCGCCAGATGCTTCGAGTTCGAGAGTGGACGCCTCAGTTCCGTCATGGATTTCCAGGGCTTCTTAAATGACTTGCAAGATTGGGAACTTTCTCGTAAGGACAAAGCGCGAAAAATGAAGTCACAAGCGCCGCAAAAGGAAAAAGTTGTGGGTGTGGAGACAGGATCAAGAGGAGAAATTTCATCGTTTGATTTTATGAAAAGTACTTCAGGACAATATGATTTATCAAGAAATAAAGATCCTTTTGGTAATGTCCATAGTGGTCTCACCACTGAAGATGTTCCCAATGCTGCTTCGGAAAAAGAACTGGGTAATGAATACTTCAAGCAGAAGAAATTTAAGGAAGCTATTGACTGCTATTCAAGAAGTATTGCCTTCTCACCAACAGCCGTGGCATATGCAAATAAAGCAATGGCCTTTATCAAACTCAGAAGATTTCAACAGGCTGAGGATGACTGTACAGAGGCTTTAAATCTAGATGATCGTTACATAAAAGCATACTCACGCCGAGCAACAGCTAGAAAAGAACTTGGGAAACTTAAAGAAGCAATGGAGGATGCTGAATTTGCTCTGCGCTTGGAACCTGAAAATCAAGAAGTCAAGAAACAGTATGCTGATATCAAATCTTTGTATGAGAATGAAATTCTTCAGAAAGGATCTGGAGCTCTGAGAAGCTCTTTACAGGGAACTCAGAAGGTGGGAAAGTCAGAGGCAAATATTGACAGGACGACCATCCATCCTGTTCCAAACGGTACTGAAAAATCAAGGCCTGCTGATGTTCAAGATCACACGGAGAGACATAGCAGAATTAAAAAGCAAGAAATGAAGGCATCCGTTCAACATCTTGCTTCAAGGGTAGCTTCTCGAGTCATGGCTGAAGCTGCAAAAAATATAACATCGCCAAATTCAGCTTATCAGTTTGAGGTCTCATGGAGAGGGTTTTCAGGTGATCCTGCCCTGCAGACTCGTCTTTTAAAGGCCATATCTCCTCAAGATTTACCAAAGATATTCAAAAATGCCTTATCTTCTGCCCTACTAATGGACATCATTAAGTGTGTGGCGTCCTTTTTCATTGAAGACACAGCTCTGGCTGTTAGTTACTTGGAGCACTTGACCAAGGTTTCAAGATTTGACATGCTCATTTTGTGTCTTACAACAACAGATAAGCATGATCTGCGCAAGATCTGGGAGGAAGTTTTCTGCAGCGAGGCAACTCCAATGAAGTATGCAGAGATTCTTGACAACCTCCGATTCAAATACTGCATTGAACATTGA 1344 0.4204 MNKEGLGCHNSLVRKNGLLTPDDGARCFEFESGRLSSVMDFQGFLNDLQDWELSRKDKARKMKSQAPQKEKVVGVETGSRGEISSFDFMKSTSGQYDLSRNKDPFGNVHSGLTTEDVPNAASEKELGNEYFKQKKFKEAIDCYSRSIAFSPTAVAYANKAMAFIKLRRFQQAEDDCTEALNLDDRYIKAYSRRATARKELGKLKEAMEDAEFALRLEPENQEVKKQYADIKSLYENEILQKGSGALRSSLQGTQKVGKSEANIDRTTIHPVPNGTEKSRPADVQDHTERHSRIKKQEMKASVQHLASRVASRVMAEAAKNITSPNSAYQFEVSWRGFSGDPALQTRLLKAISPQDLPKIFKNALSSALLMDIIKCVASFFIEDTALAVSYLEHLTKVSRFDMLILCLTTTDKHDLRKIWEEVFCSEATPMKYAEILDNLRFKYCIEH 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0247 447 Gene3D Tetratricopeptide repeat domain 110 218 IPR011990 GO:0005515
Acco06g0247 447 SUPERFAMILY TPR-like 115 232 IPR011990 GO:0005515
Acco06g0247 447 SMART tpr_5 187 220 IPR019734 GO:0005515
Acco06g0247 447 SMART tpr_5 120 153 IPR019734 GO:0005515
Acco06g0247 447 SMART tpr_5 154 186 IPR019734 GO:0005515
Acco06g0247 447 Pfam Tetratricopeptide repeat 124 152 IPR001440 GO:0005515
Acco06g0247 447 PANTHER OS05G0129900 PROTEIN 37 290 - -
Acco06g0247 447 MobiDBLite consensus disorder prediction 265 286 - -
Acco06g0247 447 Pfam Potential Monad-binding region of RPAP3 324 412 IPR025986 -
Acco06g0247 447 Coils Coil 193 213 - -
Acco06g0247 447 Pfam Tetratricopeptide repeat 155 183 IPR019734 GO:0005515
Acco06g0247 447 Pfam Tetratricopeptide repeat 188 220 IPR019734 GO:0005515
Acco06g0247 447 ProSiteProfiles TPR repeat profile. 120 153 IPR019734 GO:0005515
Acco06g0247 447 ProSiteProfiles TPR repeat profile. 187 220 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0247 Acco-ChrAcco06 1602282 1606626 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0247 113 224 Calmodulin-binding Proteins AT3G25230 32.812 9.19e-10 58.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco06g0247 06 1602282 1606626 Acco06g0247 06 1602282 1606626 ECH