Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0244 ATGGATCATACTTACAGACCGAGTACCCATGGCCTCCCGCTCCAGGCGACCCGCCCGGATGATTCCGGATCAGATCGCTTCTTCAAGACCCAGATCGCCAATCACCCTCTTTATCCCAACTTACTCTCCGCCTACTTAGCCTGCCAAAAGGTCGGAGCTGACCCGGAAAGAGCTTCCCTTCTTGAAGAAATAGGTCACCAACGCCCCCTCCTCCATACTCCTCTCCACATAGGTCACGACCCTGAACTCGACAACTTCATGGAATCTTTCTGTGGACTTCTCCATAGATACAAAGAGGAACTCTCCAGGCCCTTCCACCAAGCCTCCTTGTTTCTCTGCACTATGGAATCAAAATTCACCAATCTTTGCAGCGGAACATTCGCAATTTCCTCATTTGCTCCTCTTTCTGATGAGGCAAGTGGTAGTAAAGAGAAGGGGCTAAGTTGTGGAGATGAAGAAGCAGGTGAAGGTGATGAATGTGAAGGGAGGCGTTTTGCAGGCGAACAAGAGGTAAGAGAAATGCTGCTTCGCAAGTACAGTGGCTACCTTAGCAGCTTGAGGGAGGAGTTGTTGAAGAAGAAGAAAAAGAATAAGCTTCCAAATGAAGCGAGGATGGCTCTCCTTCAATGGTGGAACAACCACTACAGATGGCCTTATCCTACGGAAGAGGAGAAATTGAAGCTATCAGAAATGACAGGACTGGATCAAAAGCAGATCAATAATTGGTTCATCAATCAGAGGAAACGACACTGGAAACCATCCGAAGATATGCGTGTCTCCATCATGGAAGGTCACAGTGATGGTGGCATAGGTTGA 816 0.4816 MDHTYRPSTHGLPLQATRPDDSGSDRFFKTQIANHPLYPNLLSAYLACQKVGADPERASLLEEIGHQRPLLHTPLHIGHDPELDNFMESFCGLLHRYKEELSRPFHQASLFLCTMESKFTNLCSGTFAISSFAPLSDEASGSKEKGLSCGDEEAGEGDECEGRRFAGEQEVREMLLRKYSGYLSSLREELLKKKKKNKLPNEARMALLQWWNNHYRWPYPTEEEKLKLSEMTGLDQKQINNWFINQRKRHWKPSEDMRVSIMEGHSDGGIG 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0244 271 SMART ELK_2 170 191 IPR005539 GO:0003677
Acco06g0244 271 MobiDBLite consensus disorder prediction 136 161 - -
Acco06g0244 271 Pfam ELK domain 172 191 IPR005539 GO:0003677
Acco06g0244 271 ProSitePatterns 'Homeobox' domain signature. 228 251 IPR017970 GO:0000981|GO:0006355
Acco06g0244 271 SMART KNOX2_2 73 124 IPR005541 GO:0003677|GO:0005634
Acco06g0244 271 Gene3D - 188 263 - -
Acco06g0244 271 ProSiteProfiles ELK domain profile. 170 190 IPR005539 GO:0003677
Acco06g0244 271 CDD homeodomain 200 254 IPR001356 GO:0003677
Acco06g0244 271 ProSiteProfiles 'Homeobox' domain profile. 190 253 IPR001356 GO:0003677
Acco06g0244 271 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 32 258 - -
Acco06g0244 271 SMART HOX_1 192 257 IPR001356 GO:0003677
Acco06g0244 271 Pfam KNOX2 domain 76 123 IPR005541 GO:0003677|GO:0005634
Acco06g0244 271 Pfam Homeobox KN domain 210 249 IPR008422 GO:0003677|GO:0006355
Acco06g0244 271 MobiDBLite consensus disorder prediction 1 23 - -
Acco06g0244 271 Pfam KNOX1 domain 29 67 IPR005540 GO:0003677|GO:0005634
Acco06g0244 271 MobiDBLite consensus disorder prediction 144 161 - -
Acco06g0244 271 SUPERFAMILY Homeodomain-like 192 262 IPR009057 -
Acco06g0244 271 SMART KNOX1_2 26 70 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0244 Acco-ChrAcco06 1576935 1580365 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0244 18 266 Homeobox Transcription Factor Family AT1G23380 49.412 9.74e-76 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Acco06g0244 KNOX2 3.3e-18 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco06g0244 06 1576935 1580365 Acco06g0244 06 1576935 1580365 ECH