Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0233 ATGGATGAGATTCGACCCCACTCCGGCGGACACACCGCTTATTATCCCTCTCACCACGACGCATCTTCACGGATGGAGGTAAATAACCGAAGCTCATCCCGTCGGAATTGGTTGAAGTGGAAGATTAATGACCCTGAAACCAAGAGAATGCGAAGATTAGCCAAGTACAAGCTCTACCAAACTCAAGGTAAGCTCAAGACTTCTTTCAAAAAGGGTCTTCGCTGGCTTAAAATCAGATGCGTCGCTGTTATAACCGCCTTCCCTCTTATTCTCACCCGCCCAAAAAAGAGTTCATACTTCATATCCAGCGTCTCAGACTTCAAAGCAGCAAAGCGCGGGAGAACTGACTGTGGAATCGGAATGGGAAGCAAGAAGAAACACGATCTGGAGCTTGAGAAAGCTCGTTTGGTGAGCTTGGCTCTTGATTTCGGCTTCGATGAAGACTCCACTGGAAAATGTTTGGATGGGCTTGTCGCCTTATACGGCGAGGATGGCCGAGATTTTATCACTGTGGAGCACTGCGGTGAAGATTTTCTAGCAGCTTTAGCTGATTCAATGCAAGATAACGAGGAATGGGATGATTTACAGGCAATAGAATCAGAAGCTTGTGGAACTTTGACTAACCTACTTGATAAAAATGCTGTCGAGTGTAAGTATGAAGATAATGACATTTTAGGAGGTTGCATCAATATTATCGAGGATTCTCCGGAACTTCAGAAAAACCAGAAAGTGGTGGAGTTGGTTTCAAGTGACGAGGATATGGACTTTAGTATTTCAAGGGAAAAATGTGCGCCTCCAGGGTCTTATTTGACTGATAATATATTTGCACGCCAACAGCCTCCAAGATCAGGGGACTGCAGAAGTAGCATCACTCAGGGCTCAACTTCTTCAACTGCCAGCAAAATAAGGTTGTCAGAACCTACGGATGAAAACCGTACTCTCACTTATGAAGAATTACAGGATCTGGATAACATTGAAATGGCAAATGTTGTTATATTTGGTAATAGGACATTTCGACCATTGCAGCATCAAGCTTGTAAAGTAGCTTTGGCAAAGCAAGATTGTTTTATTCTTATGCCAACAGGGGGTGGTAAATCTCTTTGCTATCAGCTTCCAGCAACTCTTCAATCAGGTGTTACAGTAGTTGTATCTCCTTTACTCTCACTCATTCAGGACCAGATAGTCACGTTGAACCTCAAGTTTGGAATACCAGCTACATTTTTGAATTCTCAGCAAACTACTTCACAAGCAGCAGCTGTCCTTCAAGAGCTGAGAAAAGACAAACCGTCATGCAAGCTCTTGTATGTGACGCCTGAGAGAATTGCTTGCAATCAATCATTTGTCGAGGTTCTAAAATGCATGCACAACAAGGGACAGCTAGCAGGTTTCATTGTTGATGAGGCGCACTGCGTTAGCCAATGGGGACATGACTTCCGGCCTGATTATCGGGGACTAGGATGCCTTAAGCTGAACTTTCCTGATGTGCCTGTCATGGCATTGACTGCCACTGCAACCCACTCTGTCCGCGAGGACATCTTGAGTGCTTTAAGAATCCCCCGTGCCATTGTCCTTGAGAGAAGTTTTGATAGGCCAAACTTGAAGTATGAAGTCATTGTTAAGACAAAAGAGCCGCTAAAGCAGCTTGGGACCCTAGTAACGGACCGCTTCAAGAATCAATGTGGAATTGTTTACTGCCTTTCAAAAAGTGAATGTGTTGAGGTCTCAAAATATTTGAACCAGAAATGTAACATAAAGACAGTGTATTACCATGCTGGCTTGGCTGCCCGCCAGAGAGTTGCTGTTCAAAAGAAATGGCACGACGGAGAGGTCCACATTGTTTGTGCAACTATTGCTTTTGGAATGGGGATAGACAAGCCTGATGTTCGCTTTGTCATCCACAATACGTTGTCTAAATCAATTGAAAGCTATTATCAAGAATCAGGAAGGGCTGGAAGAGATAATCTACCTTCAGTTTGCATTGCTCTCTACCAGAAGAAGGATTTTAGTAGAGTCGTATGCTTGATAAGAAATGGCCAAGGTTATAAAAGGGAAAGTTTAAAGTCGGCAATCGCTCGAGCCAAAAAAATGCAACAATATTGTGAACTAAAGGATGAATGCCGGAGGCAAGCTTTACTCAAACACTTTGGAGAATCTCTTGACAGAAAAACCTGCAAATACGGATCTAACCCCTGCGATAACTGCCTCAAGAATGGTCTGTGA 2220 0.4369 MDEIRPHSGGHTAYYPSHHDASSRMEVNNRSSSRRNWLKWKINDPETKRMRRLAKYKLYQTQGKLKTSFKKGLRWLKIRCVAVITAFPLILTRPKKSSYFISSVSDFKAAKRGRTDCGIGMGSKKKHDLELEKARLVSLALDFGFDEDSTGKCLDGLVALYGEDGRDFITVEHCGEDFLAALADSMQDNEEWDDLQAIESEACGTLTNLLDKNAVECKYEDNDILGGCINIIEDSPELQKNQKVVELVSSDEDMDFSISREKCAPPGSYLTDNIFARQQPPRSGDCRSSITQGSTSSTASKIRLSEPTDENRTLTYEELQDLDNIEMANVVIFGNRTFRPLQHQACKVALAKQDCFILMPTGGGKSLCYQLPATLQSGVTVVVSPLLSLIQDQIVTLNLKFGIPATFLNSQQTTSQAAAVLQELRKDKPSCKLLYVTPERIACNQSFVEVLKCMHNKGQLAGFIVDEAHCVSQWGHDFRPDYRGLGCLKLNFPDVPVMALTATATHSVREDILSALRIPRAIVLERSFDRPNLKYEVIVKTKEPLKQLGTLVTDRFKNQCGIVYCLSKSECVEVSKYLNQKCNIKTVYYHAGLAARQRVAVQKKWHDGEVHIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIALYQKKDFSRVVCLIRNGQGYKRESLKSAIARAKKMQQYCELKDECRRQALLKHFGESLDRKTCKYGSNPCDNCLKNGL 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0233 739 CDD SF2_C_RecQ 530 663 - -
Acco06g0233 739 Gene3D - 530 738 IPR027417 -
Acco06g0233 739 Gene3D - 297 529 IPR027417 -
Acco06g0233 739 Pfam Helicase conserved C-terminal domain 551 653 IPR001650 -
Acco06g0233 739 Pfam Domain of unknown function (DUF3511) 43 84 IPR021899 -
Acco06g0233 739 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 544 694 IPR001650 -
Acco06g0233 739 CDD DEXHc_RecQ 332 529 - -
Acco06g0233 739 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 346 522 IPR014001 -
Acco06g0233 739 NCBIfam RecQ family ATP-dependent DNA helicase 332 736 IPR004589 GO:0004386|GO:0006310
Acco06g0233 739 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 461 470 IPR002464 -
Acco06g0233 739 SMART helicmild6 572 654 IPR001650 -
Acco06g0233 739 MobiDBLite consensus disorder prediction 277 304 - -
Acco06g0233 739 FunFam ATP-dependent DNA helicase 319 529 - -
Acco06g0233 739 FunFam ATP-dependent DNA helicase 530 737 - -
Acco06g0233 739 Pfam DEAD/DEAH box helicase 340 508 IPR011545 GO:0003676|GO:0005524
Acco06g0233 739 MobiDBLite consensus disorder prediction 1 30 - -
Acco06g0233 739 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 378 674 IPR027417 -
Acco06g0233 739 PANTHER DNA HELICASE RECQ FAMILY MEMBER 318 736 - -
Acco06g0233 739 MobiDBLite consensus disorder prediction 277 307 - -
Acco06g0233 739 Pfam RecQ zinc-binding 666 735 IPR032284 -
Acco06g0233 739 SMART ultradead3 334 538 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0233 Acco-ChrAcco06 1529103 1536077 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0233 463 652 Eukaryotic Initiation Factors Gene Family AT5G11170 27.041 2.28e-09 58.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco06g0233 06 1529103 1536077 Acco06g0233 06 1529103 1536077 ECH