Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0224 ATGGCGACGAGGAACCGCACTTTGCTCTACAGGAAGTACAGAGATGCATTGAAGAGCGTTCGGGTTCCGTCGAGTTCCGCCGGTACTGGTGGTCCGGTGATTGAATTGGTCAGCACATCGCTTCTGAATCAGGATCGTTCTTATGCTCCGCTTAGTACCGAGGATCCGGGTAATTCAAGTAAGGGTCCACTTACTGTAGGACTACCTCCAGCTTGGGTGGATGTATCTGAAGAAATATCAGCAAATGTGCAACGGGCACGCACAAAAATGGCAGAGTTGGCGAAAACTCATGCAAAGGCTTTAATGCCATCATTTGGAGATGGTAAGGAGGAACAGCGTGTCATTGAAACTCTAACTCATGAGATAACTGACTTGATAAAGAGATCAGAGAGGCGACTGCAGAGGCTTTCTGCTACCGGGCCTTCTGAGGATTCCGTTGTGAGGAAGAACGTGCAGCGTTCTCTAGCTACTGACCTTCAGAACCTCTCTGTAGAGCTCCGCAAGAAACAATCAAATTATTTGAAGCGACTTAGGCAGCAAAAAGAGGGTCAAGATGGGGTGGATCTAGAGATGAACATAAATGGAAGTAAATCCAGATTTGAAGATGATGCTTTGGACAATATGGTATTTAACGATCATCAGATGGCCAAGCTGAAAAAAAGTGAGGCATTCACCGTTGAAAGAGAAAAGGAGATCCAACAGGCAAGTAAAAGTTCCTTATTTTCTGTTGTGGAATCAGTAAACGAGCTTGCTCAAATAATGAAAGATTTGTCTGTACTAGTAATAGACCAGGGAACCATTGTTGATCGGATAGACTACAACATTCAGAATGTTGCATCAACAGTTGAGGATGGCCTGAAAGAGCTGCATAAGGCCGAGAGAACACAAAAAAAGGGGGGCATGGTGATGTGTGCGACGATGCTTGTTATCATGTGCTTCGTAATGCTGGTTCTCTTAATCCTTAAGGAAATACTTTTGTGA 981 0.4465 MATRNRTLLYRKYRDALKSVRVPSSSAGTGGPVIELVSTSLLNQDRSYAPLSTEDPGNSSKGPLTVGLPPAWVDVSEEISANVQRARTKMAELAKTHAKALMPSFGDGKEEQRVIETLTHEITDLIKRSERRLQRLSATGPSEDSVVRKNVQRSLATDLQNLSVELRKKQSNYLKRLRQQKEGQDGVDLEMNINGSKSRFEDDALDNMVFNDHQMAKLKKSEAFTVEREKEIQQASKSSLFSVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVASTVEDGLKELHKAERTQKKGGMVMCATMLVIMCFVMLVLLILKEILL 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0224 326 SUPERFAMILY t-snare proteins 68 285 IPR010989 GO:0016020|GO:0016192
Acco06g0224 326 Gene3D - 69 284 - -
Acco06g0224 326 FunFam Syntaxin-43 69 284 - -
Acco06g0224 326 CDD SNARE_syntaxin16 227 291 - -
Acco06g0224 326 SMART SynN_4 63 178 IPR006011 GO:0016020
Acco06g0224 326 Coils Coil 76 96 - -
Acco06g0224 326 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 230 292 IPR000727 -
Acco06g0224 326 SMART tSNARE_6 225 292 IPR000727 -
Acco06g0224 326 Pfam SNARE domain 266 318 IPR000727 -
Acco06g0224 326 PANTHER SYNTAXIN 75 313 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0224 Acco-ChrAcco06 1484538 1487574 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0224 1 326 SNARE and Associated Proteins AT5G26980 73.874 1.87e-174 484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco06g0224 06 1484538 1487574 Acco06g0224 06 1484538 1487574 ECH
Acco02g0452 02 3269010 3273508 Acco06g0224 06 1484538 1487574 ECH