Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0214 ATGGCCCATCCCCTTCATTTCCTTTTCATTCTCATCCTTTTACTTTCTTTCAACACTGAAGCTTTCTTAGACGAAATCCCCTCCGACACCAGCAACCAATTAGACCTGCACGCCATGATCGCCCAGGTCTGCATGGATGTCGAAGACCAGAACACGTGTCTAGCCAATATCCAGAACGAGATCGTCAAGCATGGCCCTCCGACGCCATCTTCCGTTGTGACCGCTGCACTCCGAGCCACACTCAACGAAGCCGTGGGAGCCATTGACAAAATCTCCAAGTTCAGCACCTTCTCCATTAGCTATCGCGAGCAAGTAGCCATCCAAGACTGCAAGGAGCTTCTTGATTTCTCGGTGTCCGAGCTGGCCTGGTCGCTGGGCGAGATGAGAACAATTCGTGCCGGTGATGGTAGCGTTGATTATGACGGAGACCTCCAAGCTTGGCTAAGTGCGGCACTCAGCAACCAGGACACGTGTCTCGAGGGCTTCGAGGGCACCGACCGTCGTCTTCAGGGTTACATCAGCGGCAGCCTCACACAAGTCACACAGCTTATCAGTAACGTTTTGGCTTTGTACACTCAGTTGCATAGCTTACCCTTCAGACCTCCGGCGAATAACACCAGATTAGCAAATGACCGGAGCTCCGAGTTTCCGGAATGGATGACGGAGAGTGATCAAGAGCTGCTGAGATCTCAGCCGCGAGGGGTGCATGCGGATGCTGTTGTGGCGTTGGATGGGAGCGGCCATTACCGTTCCATCTCAGAAGCTGTGGATGCGGCTCCAATCCTGAGCAAAAGGAGGTATGTTATTTACGTGAAAAGCGGGATTTATAAAGAGAACGTGGATATGAAGAGGAAGAAGATCAACATCATGCTAGTAGGAGAAGGTATTGGCAAGACCATCGTCACGGGCAACCGCAATTTCATGCAAGGATGGACTACTTTTCGAACCGCCACTGTTGCTGTGTCGGGGCAGGGATTCATAGCGAGGGACATGTCATTTAGAAACACAGCAGGACCAGAGAATCATCAGGCGGTGGCTCTGAGGGTGGATTCAGACCAATCAGCGTTCTTCAGGTGTAGCATAGAAGGTCACCAGGACACACTATATGCCCACTCACTCAGACAATTCTACCGTGAATGCGAAATCTACGGCACCATAGACTTCATATTCGGGAACGGAGCTGCCGTGCTGCAAAACTGCAAGTTATACACAAGAGTGCCGCTGCCATTGCAGAAGGTCACTATAACGGCGCAGGGCAGGAAAAGCCCACACCAGAGCACCGGGTTTATAATCCAGGACAGCTTTATTCTGGCCACTCAACCCACCTATTTGGGCAGGCCGTGGAAGCAGTTCTCCAGGACGGTGTACATGAACACGTACATGAGTGGCCTTGTGCAGCCTCCAGGCTGGCTCGAGTGGGCCGGCAACTTTGCATTGAACACCTTGTGGTACGGTGAGTATAAGAACTACGGACCCGGTTCGGGTCTGGCTCGAAGGGTCAGGTGGCCCGGTTATCATGTTATTAAAGATGCCGCCGTCGCCAACTACTTCACCGTTCAGCGCTTCATTGACGGCACCACGTGGTTGCCCTCCACGGGGGTAAAGTTCACGGCTGGCTTGACCAATTAA 1629 0.5249 MAHPLHFLFILILLLSFNTEAFLDEIPSDTSNQLDLHAMIAQVCMDVEDQNTCLANIQNEIVKHGPPTPSSVVTAALRATLNEAVGAIDKISKFSTFSISYREQVAIQDCKELLDFSVSELAWSLGEMRTIRAGDGSVDYDGDLQAWLSAALSNQDTCLEGFEGTDRRLQGYISGSLTQVTQLISNVLALYTQLHSLPFRPPANNTRLANDRSSEFPEWMTESDQELLRSQPRGVHADAVVALDGSGHYRSISEAVDAAPILSKRRYVIYVKSGIYKENVDMKRKKINIMLVGEGIGKTIVTGNRNFMQGWTTFRTATVAVSGQGFIARDMSFRNTAGPENHQAVALRVDSDQSAFFRCSIEGHQDTLYAHSLRQFYRECEIYGTIDFIFGNGAAVLQNCKLYTRVPLPLQKVTITAQGRKSPHQSTGFIIQDSFILATQPTYLGRPWKQFSRTVYMNTYMSGLVQPPGWLEWAGNFALNTLWYGEYKNYGPGSGLARRVRWPGYHVIKDAAVANYFTVQRFIDGTTWLPSTGVKFTAGLTN 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0214 542 SUPERFAMILY Pectin lyase-like 235 539 IPR011050 -
Acco06g0214 542 FunFam Pectinesterase 232 540 - -
Acco06g0214 542 NCBIfam pectinesterase inhibitor domain 8 195 IPR006501 GO:0004857
Acco06g0214 542 FunFam Pectinesterase 37 196 - -
Acco06g0214 542 Gene3D - 233 540 IPR012334 -
Acco06g0214 542 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 195 IPR035513 -
Acco06g0214 542 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 195 IPR035513 -
Acco06g0214 542 ProSitePatterns Pectinesterase signature 2. 382 391 IPR033131 -
Acco06g0214 542 Pfam Pectinesterase 238 525 IPR000070 GO:0030599|GO:0042545
Acco06g0214 542 ProSitePatterns Pectinesterase signature 1. 263 282 IPR018040 -
Acco06g0214 542 Pfam Plant invertase/pectin methylesterase inhibitor 39 190 IPR006501 GO:0004857
Acco06g0214 542 CDD PMEI-like_4 65 194 - -
Acco06g0214 542 PANTHER PECTINESTERASE 17 530 - -
Acco06g0214 542 SMART PMEI_2 35 190 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0214 Acco-ChrAcco06 1436249 1438092 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0214 9 542 Carbohydrate Esterase AT3G05620 60.512 0.0 684