Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0209 ATGTCCAATCGCAAATCTGGAGAATTGGAGTGGAGATCCTCCATCTCCACAATGATGTCCACTCTCCAGTCCTTTTCATCGGTTGAAGGACCATCTTGGGGAATAAGACGATGCCACAGTCCTCACCCAGCACTCCTCTGCTTCTCGAGTTTCTGCTCAGGAAGAATGAGTCGCCTGTCAAGTCGCACTATTTATGTTGGCAATCTTCCTGGTGATGTTCGTTTGAGAGAAGTTGAGGATCTTTTCTATAAGTATGGTCCTATTGTTGACATTGATTTGAAAATCCCTCCAAGACCACCTGGCTATGCTTTTGTGAAGTTTGAGGATCGTCGTGACGCTGAAGATGCTATTCACTATCGGGATGGTTATAATTTTGATGGTTTCCGATTGCGAGTTGAATTTGCTCACGGTGGGCCGGGATATTCATCATCCGTTGACCGTTACAGTAGTTATAGTGGTGGTGGTGGTAGCCGTGGGGCTGCCAGGCGTTCAAACTATCGTGTTCTGGTCACTGGATTACCCCCTTCAGCTTCATGGCAAGACTTGAAGGATCACATGCGTAAAGCTGGTGATGTATGTTTCTCTGAAGTCTTTCGGGAGCGTGGTGGCATGACTGGGATCGTGGATTATACTAATTATGATGACATGAAGTATGCTATCAGGAAACTTGATGACTCCGAATTCCGGAATGCATTTTCTCGCGCATACATACGGGTGAGGGAATATGATCGACGAAGTTATTCTAGGAGTCCCAGCCGTGATTCAAGGAGGAGTTATTCTAGAAGCTATAGCCGCAGTCCTTATAGGTCACGAAGCCGAAGCCGAAGCCGCAGTTGGAGTCAGGACCATAGTTATAGAGGCAGGGGCAGAAGTTATTCACCCAAGGTAAAACGTTCAAGACGTTCTATATCTCTTTCAAGATCCCGCTCAAGATCCAGATCTCCATATTCATCTGCTTCACCTTATAGAAGTTACAGTCCTCGCCGTAAAAGCTTGTCGCGATCCCGTTCACCTTCGGTGAGATCTGACCGCAGCAGATCTGTTGACTCTGGATATCGCTATTGA 1065 0.4676 MSNRKSGELEWRSSISTMMSTLQSFSSVEGPSWGIRRCHSPHPALLCFSSFCSGRMSRLSSRTIYVGNLPGDVRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVKFEDRRDAEDAIHYRDGYNFDGFRLRVEFAHGGPGYSSSVDRYSSYSGGGGSRGAARRSNYRVLVTGLPPSASWQDLKDHMRKAGDVCFSEVFRERGGMTGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYIRVREYDRRSYSRSPSRDSRRSYSRSYSRSPYRSRSRSRSRSWSQDHSYRGRGRSYSPKVKRSRRSISLSRSRSRSRSPYSSASPYRSYSPRRKSLSRSRSPSVRSDRSRSVDSGYRY 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0209 354 SMART rrm1_1 167 236 IPR000504 GO:0003723
Acco06g0209 354 SMART rrm1_1 63 133 IPR000504 GO:0003723
Acco06g0209 354 Gene3D - 167 243 IPR012677 -
Acco06g0209 354 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 166 244 IPR000504 GO:0003723
Acco06g0209 354 MobiDBLite consensus disorder prediction 243 260 - -
Acco06g0209 354 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 56 165 - -
Acco06g0209 354 MobiDBLite consensus disorder prediction 243 354 - -
Acco06g0209 354 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 168 230 IPR000504 GO:0003723
Acco06g0209 354 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 64 131 IPR000504 GO:0003723
Acco06g0209 354 MobiDBLite consensus disorder prediction 290 307 - -
Acco06g0209 354 FunFam serine/arginine-rich splicing factor SR34A-like 166 243 - -
Acco06g0209 354 MobiDBLite consensus disorder prediction 336 354 - -
Acco06g0209 354 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 54 314 - -
Acco06g0209 354 CDD RRM1_SF2_plant_like 63 133 - -
Acco06g0209 354 MobiDBLite consensus disorder prediction 308 333 - -
Acco06g0209 354 SUPERFAMILY RNA-binding domain, RBD 61 233 IPR035979 GO:0003676
Acco06g0209 354 CDD RRM2_SF2_plant_like 166 241 - -
Acco06g0209 354 Gene3D - 55 166 IPR012677 -
Acco06g0209 354 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 137 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0209 Acco-ChrAcco06 1405352 1414708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0209 58 135 Eukaryotic Initiation Factors Gene Family AT3G11400 33.333 3.49e-07 49.7