Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0197 ATGGATGGTAAGGACGCATCTTCCGATCAAGTCATTGCAGAAATGCTAGAAATGGGGTTTGAATATGCCAGTGTTGTGCAAGCTTTGAAAGCAGTCGGTCCATCTACTCATAGTGCAGTGGAGTTTATCCTGAAAAATGCTGGTAGAAGTAGCGGTAAAACATATGGTCTCAGAAAAAGGGACTTGGCCTCATCCCATTCCGTGAGTTATGTTCGACAGTCTAGCATCCTGAACCGTCTCCAAGCCACTAATGAATCCACAAAAAGAAAGACAGATACTGTAATTGGTGTACCATTTAGAAGGTTGGAAGTTCCTTCAGGCAATGTGCAAGAGTCGAAGGAGCCTTTGTCTGATATGGATGTTGATTCCAATATCATGTCAGGAAATTGTAAGGTTGATTCTCTGGATGAATTGGATAGTTCATCATATTGGGAGCAGAAAGCTAGCAATCTCTTGCAAGAGCATTTTGGCTTTTCATGCTTGAAGAATTTTCAAAAGGAAGCCCTGATTGCTTGGGTAACTCATAAAGACTGTCTTGTCCTGGCTGCAACGGGATCTGGAAAATCCTTGTGCTTTCAGATTCCTGCATTGCTGTCTGGGAAAGTGGTGGTTGTGATTTCACCCTTAATAAGCCTGATGCATGATCAATGCTTAAAGCTAGCAAGACATGGGATCAGTGCTTGCTTTCTTGGGTCTGGGCAACCTGACAATACTGTTGAACAGAAAGCAATGAGAGGCATGTATAGCATAGTATATGTATGCCCAGAGACAGTTCTGAGATTGATTGAACCACTACAGAAGCTTGCAAAAAGTCATGGTATTGCTTTATTTGCAATTGATGAAGTGCATTGTGTTTCTAAATGGGGCCATGATTTCCGGCCAGACTACAGGCGACTGTCTGCATTAAGGGAAAATTTCAGTGCTAGCAAGCTAGAATTCCTGAAATTTGATATACCTCTGATGGCTTTGACTGCTACAGCTACCAACCTAGTTCGAGAGGATGTTTTAAAGTCACTACATATGTCAAAAGAAACAAAGATTGTTCTCACTTCCTTTTTCCGGCCTAATTTACGGTTCATTGTAAGGCATAGCAAGACATCTTCATCTTCTTATGGGAAAGATTTTCATGAGTTAGTTGAACTATATGGTAAAACGCAAAAGTCAGCTGACAAGAAAAAAGAATTTATATCAGAGGAATCACATGATGTTTTCAATAGCTCTGATGCCAGTAGAATCTGTGAGGTTGACAGTCTTTCTCCTTATGACTTGGATGGTGACCAAGATGATTACAGTGAAGGAGATAACAGTGTATTGCATTCAAGAAGCTCTAGTGGTTCTATAAATGGAAAAGAATTGTCAGTTGAGTACCTGGAAAACGACATTGATGTCTTTCAAAGTGTGGATGACTGGGATGTTGCTTGTGGTGAATTCTGTGGACATCCTTCTCAAAAGGAATGGAAGTTATCTGAGATTGTTGATCCACCCAATAAATCAGAAGAAAGGCTTAGACTTCTGAAAGAGCCTTTAGAGCGAGGACCAACTATCATATATGTACCCACCAGAAAAGAAACGCTGAACATTGCAAAGTATCTATGTGAATGTGGTGTGAAGGCTGCTGCTTATAATGCATCGCTGCCCAAATCACATCTAAGAAGAGTACACAAGGATTTTCATGAAGACACATTAGAGGTTGTTGTTGCGACAGTGGCTTTTGGAATGGGGATTGACAAATTGAATGTCAGAAGAATCATCCATTACGGTTGGCCACAGAGTTTAGAAGCCTATTACCAAGAAGCTGGTCGGGCTGGACGAGATGGTAAATTAGCAGATTGCATTCTTTATGCAAACCTATCAAGGGAACCGTCACTTTTGCCCTGTCGTAGAAGTGAAGATCAGTTAAAACATGCCTATGTCATGTTGTCTGATTGTTTCAGATATGGAATGAATACTTCATCTTGTAGGGCAGAGACTCTTGTGAAGTACTTTGGAGAGGACTTCCATAATGAAAAGTGTCTCATATGTGATGTGTGTGTTGATGGACCACCTCAAATGCAAAATCTGAGAGAGGAGGCATGTACTTTGCTACAAGCTATAGCTGAAAATTATGGACAGAGCTCTGATGTGGATGGCTTATATGATGACGATATACATTTTGATCCTGAAGAAAGAAGAATTAAAGGGAGGCTTAGTCTTAATATGGTTGTTAGGAAGATAAGGGAGCAGTCTCAAAAATTCTTGACGACTGATATGTTATGGTGGAGAGGTCTTGCTCGAATTATGGAACAGAAAGGATACATCAGGGAGGGAGATTACAAGAGCCATGTGCAGATTAAGTTCCCGGAACCGACAAAAGTGGGATTGAAATTTGTCAAGTCAAATAGTGAGCAAGCTTTCTATGTTTACCCTGAGGCAGATATGCTGCTTGCAGCGAAGAGCAACCGTAGCAAGCCATTCTCCTCATTCTCAGATTGGGGAAAAGGTTGGGCTGATCCTGAGATTCGTCACCAGAGGCTTCAAAGAATGCAACTCAATAGGAAGCCACCTAAGCTGCCAAGTCCTAGAAAATCCCACAAGAGGAAATTTGTTAAGGTGAAGCCTGATCTGAGGACTTGTCGTGGGAGACTAGATGCAAAACTCTCCAAACGTACGTGA 2652 0.4144 MDGKDASSDQVIAEMLEMGFEYASVVQALKAVGPSTHSAVEFILKNAGRSSGKTYGLRKRDLASSHSVSYVRQSSILNRLQATNESTKRKTDTVIGVPFRRLEVPSGNVQESKEPLSDMDVDSNIMSGNCKVDSLDELDSSSYWEQKASNLLQEHFGFSCLKNFQKEALIAWVTHKDCLVLAATGSGKSLCFQIPALLSGKVVVVISPLISLMHDQCLKLARHGISACFLGSGQPDNTVEQKAMRGMYSIVYVCPETVLRLIEPLQKLAKSHGIALFAIDEVHCVSKWGHDFRPDYRRLSALRENFSASKLEFLKFDIPLMALTATATNLVREDVLKSLHMSKETKIVLTSFFRPNLRFIVRHSKTSSSSYGKDFHELVELYGKTQKSADKKKEFISEESHDVFNSSDASRICEVDSLSPYDLDGDQDDYSEGDNSVLHSRSSSGSINGKELSVEYLENDIDVFQSVDDWDVACGEFCGHPSQKEWKLSEIVDPPNKSEERLRLLKEPLERGPTIIYVPTRKETLNIAKYLCECGVKAAAYNASLPKSHLRRVHKDFHEDTLEVVVATVAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGKLADCILYANLSREPSLLPCRRSEDQLKHAYVMLSDCFRYGMNTSSCRAETLVKYFGEDFHNEKCLICDVCVDGPPQMQNLREEACTLLQAIAENYGQSSDVDGLYDDDIHFDPEERRIKGRLSLNMVVRKIREQSQKFLTTDMLWWRGLARIMEQKGYIREGDYKSHVQIKFPEPTKVGLKFVKSNSEQAFYVYPEADMLLAAKSNRSKPFSSFSDWGKGWADPEIRHQRLQRMQLNRKPPKLPSPRKSHKRKFVKVKPDLRTCRGRLDAKLSKRT 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0197 883 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 497 652 IPR001650 -
Acco06g0197 883 Gene3D - 488 615 IPR027417 -
Acco06g0197 883 Pfam RecQ zinc-binding 629 677 IPR032284 -
Acco06g0197 883 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 6 46 IPR015940 -
Acco06g0197 883 MobiDBLite consensus disorder prediction 424 446 - -
Acco06g0197 883 MobiDBLite consensus disorder prediction 840 860 - -
Acco06g0197 883 Pfam DEAD/DEAH box helicase 164 328 IPR011545 GO:0003676|GO:0005524
Acco06g0197 883 Gene3D - 622 799 IPR036388 -
Acco06g0197 883 Pfam Helicase conserved C-terminal domain 502 605 IPR001650 -
Acco06g0197 883 PANTHER DNA HELICASE RECQ FAMILY MEMBER 139 763 - -
Acco06g0197 883 FunFam ATP-dependent DNA helicase 131 353 - -
Acco06g0197 883 NCBIfam RecQ family ATP-dependent DNA helicase 151 379 IPR004589 GO:0004386|GO:0006310
Acco06g0197 883 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 617 IPR027417 -
Acco06g0197 883 FunFam ATP-dependent DNA helicase 488 615 - -
Acco06g0197 883 SMART helicmild6 525 606 IPR001650 -
Acco06g0197 883 SMART ultradead3 157 362 IPR014001 -
Acco06g0197 883 SUPERFAMILY UBA-like 8 46 IPR009060 GO:0005515
Acco06g0197 883 Gene3D - 4 46 - -
Acco06g0197 883 FunFam ATP-dependent DNA helicase 617 795 - -
Acco06g0197 883 Gene3D - 120 353 IPR027417 -
Acco06g0197 883 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 169 345 IPR014001 -
Acco06g0197 883 CDD DEXHc_RecQ 152 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0197 Acco-ChrAcco06 1344324 1350614 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0197 483 606 Eukaryotic Initiation Factors Gene Family AT5G11170 29.032 1.84e-08 55.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco06g0197 06 1344324 1350614 Acco06g0197 06 1344324 1350614 ECH