Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0191 ATGTCAAACATAACGAGCTGTGACAGTGGTGGGAGTTTCTGCACAGAGATTAGCAGAGAAGATGGAACTATTGTTAAACAGCATCATCCTCAACATTCTTCTGCTCATCATCATCATCATCACGAGTTTCATAGTCCAACTTCTCTTACTTCAACTACCACTAACAGTAACGGTTCTAACGCCAATTCCCAACTGCCTCCTCCTCCTGTTAAGAAAAAAAGAAGCCTCCCAGGAAACCCAGATCCTAGTGCTGAAGTGATTGCTCTATCACCAAGCACTTTGATGGCGAGAAACCGATTCGTATGTGAAATCTGCAACAAAGGATTCCAAAGGGATCAGAATCTGCAATTGCACCGGCGAGGCCATAACCTTCCATGGAAGCTCAAGCAAAGGCCCACCACAGAAGTTCGAAAGCGTGTTTTTGTTTGTCCAGAGCCTTCGTGCGTCCACCATAACCCAAGTCGAGCACTGGGTGACCTCACAGGCATCAAAAAGCACTTCTCAAGAAAACACGGCGAGAAGAAATGGAAGTGCGAAAAATGCTCCAAGAGATACGCAGTCCAGTCCGACTGGAAAGCCCATTCCAAGATCTGCGGTACTAGGGAATACAAATGTGACTGTGGCACCGTATTCTCCAGGCGAGATAGCTTTATCACCCATCGAGCTTTCTGCGACGCGTTGGCCGAGGAGAATAATAAAGCCAACAATGAAGGACCACTAGGGCCAAAATTAACGGGTCCAAATTCAAACTCACTAGCTCAACTTCAAATCCCAAGTAATCCTGTTTCTTCATTGCCACTCAACTCCAACTTCATCAGCCCACAAAATGGGACGCCCCACTATAACCGTTGTGATGAAATTAAGCATCCGCTATCGCACCTTCATCGGGAGCTCTTGGAATTTCCAGCAAAACCATTTAACTACATGACTGGAAGCATGTTCGCAAGAAGCCCTTCGTCAAACAGTTCCTGTTCATCACTTCAACTGGGTTCAACTAGTTCCCTGAGCATGTTGGAAGAAAACGAGCACCAGCCAGGCGGATCAGCCCACATGTCAGCCACGGCATTGTTGCAGAAAGCAGCTCAAATGGGAGCAACCATGAATGACAGTACTAACAGCTCGTGCATGGCACCCTCATCATTGGGACACAATAATAACAACAACCACTACTTCATGAACAGTGGCCAATCTGATATGTCATCGTCTCAGTATTTCAGCGCAAATAATAATAATAGCTTCGGGATGAATAGTGTGGATATGTTCAATGCTATAATGGACCAAAGCAAGGCATTGTCGAAGATGATAGAGCAGAACAGCAGAAGCAATAATAATATGAATAACAGTGAAGTTTTGCATGGTAAAGGAAGTGGCGATGTAACGACACTGGACTTGTTGGGAATTGGAGGAGGAGGAGGAGTTGGTGGTGGTGCTCATGATGCTTTTCTGTGGCGCTAA 1455 0.4577 MSNITSCDSGGSFCTEISREDGTIVKQHHPQHSSAHHHHHHEFHSPTSLTSTTTNSNGSNANSQLPPPPVKKKRSLPGNPDPSAEVIALSPSTLMARNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRPTTEVRKRVFVCPEPSCVHHNPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYKCDCGTVFSRRDSFITHRAFCDALAEENNKANNEGPLGPKLTGPNSNSLAQLQIPSNPVSSLPLNSNFISPQNGTPHYNRCDEIKHPLSHLHRELLEFPAKPFNYMTGSMFARSPSSNSSCSSLQLGSTSSLSMLEENEHQPGGSAHMSATALLQKAAQMGATMNDSTNSSCMAPSSLGHNNNNNHYFMNSGQSDMSSSQYFSANNNNSFGMNSVDMFNAIMDQSKALSKMIEQNSRSNNNMNNSEVLHGKGSGDVTTLDLLGIGGGGGVGGGAHDAFLWR 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0191 484 MobiDBLite consensus disorder prediction 27 85 - -
Acco06g0191 484 ProSiteProfiles Zinc finger C2H2 type domain profile. 100 122 IPR013087 -
Acco06g0191 484 ProSitePatterns Zinc finger C2H2 type domain signature. 102 122 IPR013087 -
Acco06g0191 484 FunFam protein indeterminate-domain 12-like 79 147 - -
Acco06g0191 484 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 47 445 IPR031140 -
Acco06g0191 484 SMART c2h2final6 141 171 IPR013087 -
Acco06g0191 484 SMART c2h2final6 176 196 IPR013087 -
Acco06g0191 484 SMART c2h2final6 100 122 IPR013087 -
Acco06g0191 484 Pfam Zinc finger, C2H2 type 100 122 IPR013087 -
Acco06g0191 484 FunFam protein indeterminate-domain 5, chloroplastic-like 154 233 - -
Acco06g0191 484 Gene3D Classic Zinc Finger 100 140 - -
Acco06g0191 484 SUPERFAMILY beta-beta-alpha zinc fingers 99 196 IPR036236 -
Acco06g0191 484 Gene3D Classic Zinc Finger 154 235 - -
Acco06g0191 484 MobiDBLite consensus disorder prediction 46 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0191 Acco-ChrAcco06 1313597 1316485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0191 65 365 IDZ Gene Family AT3G50700 57.500 3.08e-108 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco06g0191 zf-C2H2 0.0048 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1828 02 14401248 14404609 Acco06g0191 06 1313597 1316485 CCT
Acco06g0191 06 1313597 1316485 Acco06g0191 06 1313597 1316485 CCT
Acco06g0191 06 1313597 1316485 Acco06g0191 06 1313597 1316485 ECH