Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0190 ATGTTTACTTCAGTAGCGGATACAGGACATCAAAGTAGTGGAGCGTCAGGATCCATTTTGATTCCAAAGCGGTTCGTCTGGCCTTACGGGGGAAGAAGGGTGTTTCTTATTGGCTCCTTCACAAGGTGGTCTGAACATATACCTATGTCTCCTATGGAGGGATGTCCTACTGCATTCCAAGTTATTTGCAGCTTAACGCCGGGATATCATCAGTACAAATTTAATGTGGATGGTGAGTGGCAGCATGATGAGCAACAGCCATTTGTAAGTGGGAGCTATGGAGTAGTGAATACTATTTTTTTGACAAGAGAACCAGATGCTTTGCCTTCCATCTCTATTCCTGAAATACCTGGCAGATCCCACATGGAGGTTGATAGTGATGTGTTCGGGCTTGTGGAAGCTAATCTAAGGATGTCAGAGTCTGATCTGGAGGTCTCTCGTCACCGTATAGCTGTATTCTTGTCTACATATACTGCATACGAGTTGCTTCCTGAGTCAGGCAAGGTCATTGCCTTTGATATCAACTTACCAGTTAAGCAAGCATTCCATGTTCTTTATGAACAGGGTGTACCAGTGGCTCCTTTATGGGATTTTCGCAAGAGCCAATTTGTGGGAGTGCTTAGTGCTATGGACTTCATTCTAATATTGAAAGAGCTGGGTAATCGTGACTCAAGTTTGACTGAAGAGCAACTTGAGAATCATACTATTGCTGCATGGAAAGAGGTGAAGTTACAGCAACGCAGAACAGTGGACAATGGGATATCACATCCTCAGCACTTTGTTCATGCTGGGCCTCATGAGTGCCTAAAAGATGTGGCTTTGAAAATTTTGCAAAATAATGTGGCATCTGTTCCTATCATTCACTCTGCTTCACAGGACGGTTCATTTCCTCAGCTGCTAAACCTTGCTTCCTTATCAGAAATACTAAAATGTATCTGCAGGCACTTTAAGCATTCCTCTAGTTCCTTGCCCATTCTTCATCTACCAATTGGTTCGATACCTTTGGGTACATGGGTGCCAAAAGTTGGCGAACCAAATAGACAGTCATTTGCAATGCTTAGGCCAAATGCATCTCTTGGTGCTGCCCTGTCTCTGTTAATTCAAGCTGAAGTTAGTTCAGTACCAGTTGTGGATGATAATGGCTCGTTGCTTGACATATATTCAAGAAGTGATATTACTGCGTTGGCGAAAGATAAAGCTTATGCACGGATATCCCTTCTTGAAATTAGCATCCATCAGGCATTGCTTTTAGGACAAGATGCAAATTCACCTTATGGTTCTTACAATGGCCAGAGATGTCATATGTGTTTGAGATCTGATTCACTGCATAAAGTGATGGAGCGGTTAGCTAATCCTGGGGTTAGAAGACTTGTGATTGTGGAGCCAGGCAGCAAGCGTGTGGAGGGGATTATTTCGTTGAGGGATGTCTTCAGATTCTTGTTAGGATAG 1449 0.4327 MFTSVADTGHQSSGASGSILIPKRFVWPYGGRRVFLIGSFTRWSEHIPMSPMEGCPTAFQVICSLTPGYHQYKFNVDGEWQHDEQQPFVSGSYGVVNTIFLTREPDALPSISIPEIPGRSHMEVDSDVFGLVEANLRMSESDLEVSRHRIAVFLSTYTAYELLPESGKVIAFDINLPVKQAFHVLYEQGVPVAPLWDFRKSQFVGVLSAMDFILILKELGNRDSSLTEEQLENHTIAAWKEVKLQQRRTVDNGISHPQHFVHAGPHECLKDVALKILQNNVASVPIIHSASQDGSFPQLLNLASLSEILKCICRHFKHSSSSLPILHLPIGSIPLGTWVPKVGEPNRQSFAMLRPNASLGAALSLLIQAEVSSVPVVDDNGSLLDIYSRSDITALAKDKAYARISLLEISIHQALLLGQDANSPYGSYNGQRCHMCLRSDSLHKVMERLANPGVRRLVIVEPGSKRVEGIISLRDVFRFLLG 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0190 482 SUPERFAMILY CBS-domain pair 148 318 IPR046342 -
Acco06g0190 482 SUPERFAMILY CBS-domain pair 347 481 IPR046342 -
Acco06g0190 482 Pfam CBS domain 349 393 IPR000644 -
Acco06g0190 482 Pfam CBS domain 434 481 IPR000644 -
Acco06g0190 482 ProSiteProfiles CBS domain profile. 345 403 IPR000644 -
Acco06g0190 482 Gene3D - 318 481 IPR046342 -
Acco06g0190 482 CDD E_set_AMPKbeta_like_N 24 100 - -
Acco06g0190 482 FunFam Sucrose nonfermenting 4-like protein 18 103 - -
Acco06g0190 482 SMART cbs_1 259 313 IPR000644 -
Acco06g0190 482 SMART cbs_1 349 397 IPR000644 -
Acco06g0190 482 SMART cbs_1 432 481 IPR000644 -
Acco06g0190 482 SMART cbs_1 168 217 IPR000644 -
Acco06g0190 482 Pfam Glycogen recognition site of AMP-activated protein kinase 21 103 IPR032640 -
Acco06g0190 482 SUPERFAMILY E set domains 21 101 IPR014756 -
Acco06g0190 482 Gene3D Immunoglobulins 21 109 IPR013783 -
Acco06g0190 482 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 140 480 - -
Acco06g0190 482 Gene3D - 139 317 IPR046342 -
Acco06g0190 482 ProSiteProfiles CBS domain profile. 162 224 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0190 Acco-ChrAcco06 1292567 1298718 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0190 25 140 Protein tyrosine phosphatase (PTP) family AT3G01510 29.412 8.02e-06 46.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco06g0190 06 1292567 1298718 Acco06g0190 06 1292567 1298718 CCT
Acco06g0190 06 1292567 1298718 Acco06g0190 06 1292567 1298718 ECH