Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0188 ATGGCACCAACCAGGAAATCGAGAAGTGTGAATAAACGGTTTTCAGGTTTAAATGAGGCCTCTCCTGATAAGGATGGAATTAACTCAAATAAAAATAAGAATCGGAAGAAAAAGTTGTCTGACAAATTGGGATCTCAATGGAGCAAGGAGGAACTGGAGCGTTTTTATGAAGCATACCGGAAGCATGGGAAAGATTGGAAGAAGGTATCTGCTTCTGTACGGAACAGATCCACTGAAATGGTGGAGGCTCTTTATAATATGAATAGGGCGTATTTATCTCTTCCTGAGGGGACAGCTTCTGTTGTTGGTCTCATAGCAATGATGACAGATCATTATAATGTGCTGGAAGGAAGTGATAGTGATAAGGAGAGCAGTGATGCACCTGAATCTCAAAAACATTTGAAACGGAAGCGTGGGAAAGTTCAGCTTATTTTTTCTAAAGATTCTGTTCAAAGTCATTCGGTTGCTTCTAACGATGGTTGTCTCTCTTTATTGAAGAAAAGACACTTTGATGGTAGCCAGCCTCGTGCGGTTGGAAAACGAACACCTCGCGTCCCAGTTTCCCACTCTCATAAAAAATTTGATCGGGATTTTGTTTCACCAATTAAAAGAAGCCTGAAGTCAGAGAGTAATGCTAATGATGATGAAGTTGCTCATGTTGCAGCTCTGGCTTTAACTGAGGCCTCACAAAGAGGAGGCTCACCTCATATTTCTCAAACTCAGTGCAGAAGAGCTGAGCAGAAATCCTCTCCTGTTCAAAGCTGGGAAAAAATGTCAAAGACAGCTCGTTCCAAGTTTCATGATGCATCTGCGGGTGAAGAGTGCTTGGAAGGTAGTGTAGAGAGTGGGGAGGCTGAAAATGGAGAATATGCTAGAGATACTAGTCCATTGATGGACATGGAAGGTTTTGGCACAGTTGAAGTACATCAGAAGGGGAAGAAAATTTACAGAAAGAAAGAGAGAGCAGAAAATGTTCGAAGTTATCAGCTTGATGATGGTGGGGAGGCATGTAGTGGCACTGAAGAAGGACTTTATTTTAATTCGTTGAAGGAAAAGGTTGATAGTGAGGTCACTAATGCCAAACCTGAGCAATTCTCTCCTCAAGATCAGAGGAAACGAAGCAAAAAACTTTTCTTTGGAGATGAAAGCTCTGGCTTGGATGCTTTACAAACTTTGGCTGATCTTTCTTTAATGATGCCTGTGTCTACAATGAATTCTGAGTCATCGGTCCAGTTGAAGGAAGAAAGAATGACTGTTGATAAAGATGACAAGTCTGCTTTGCCTGAATCTATGTTTACGAGTCAAAACAGAGATAAACTTAAACCACTAGGTTCAAAACAAAAGGTACTTCATGCAGTTCCAGGAATTGAGGCTTCAAACTCGAGAAAATCTAAACTTGGACGGTCGTTAGAAAACGAAATAAATGCTTCAGCTGAATCAAAAGAACATATAACTCCTGATAGAACAGGGAAAAGAAAGCGCAAGTCTGTGGCCTCAAAGGCTGTATCTGATGGAGAGAATAAAACAATGATTGAAGGAAAACAGAGTGGTCAGGTTTTTGCTCTCCCCAAACAAGTGAAACCGGTCAAATCATCTGAGAGCTCCTTGTGCAGTGATCCAAAAGATTTAACAGTGTCAACTGCAGAAATTCAGCTAGCAAGTGAAGTTAGTTTACCAAATAAAAAAAGGAGACGTAAGATGAGTCTACCGAAGACATTCAATATGAGAGATAAATCTTCTGAGAACATATTGAAAAAGCAACCTAGTAAGTATTCTTCTGGCCTTCAAGACAGGGCTTCATATTTAAAGGGAACGCTTTCTGGTTGCTTGTCATCATACATGGTTCGCAGGTGGTGTACTTTTGAGTGGTTTTATAGTGCTATTGATTATCCATGGTTTGCCAAACGGGAATTCATGGAGTATTTAAACCATGTTGGTCTAGGGAATATCCCAAGGCTGACTCATGTTGAGTGGAGCGTTATAAAAAGTTCCCTGGGCAAACCTCGCAGGTTTTCTGAGCACTTTCTTCGTGAAGAAATACAAAAGCTTGAACAGTATAGGGAATCTGTGAGGACACATTACACTGAACTACGCACTGGTATCAGGGATGGACTCCCAACAGATTTAGCAAGACCTTTATTTGTTGGACAACGAGTAATTGCTATTCACCCCAAATCAAGGGAGGTTCATGATGGGAGTGTTCTTACAGTTGACCATGACAAATGCAGGGTTCAATTTGACCGTCCTGAATTAGGGGTTGAATTTGTCATGGATATTGATTGCATGCCTATGAATCCCGTGGATAATATGCCAGAAGCTCTGAGAGGACAGATTGGTGCTGGCAGAGTTTCTTACGTGGGCAAACAGCTTCAGATAAATGAAACTTCTAATTTTGAGGGTGGGGTGACATGTGGTTCAAGTGTACCCCTGGAGAAGCTACCCACCCCTTCAAGTACTTTGTTAAAGGAGGATGTTAATCATGCTGTTGCCCAAACAAAGGTTGGAACCATTGATAACGTTAATACACTACAAGAAGCATATGCTCAGCCGCATCATCAAGCTAGAGAAGCTGATATACGTGCCCTTTCTGAACTGACTCGTGCTCTAGATAAAAAGGAAAAATTGTTAATGGAGCTTAGAAATGCAAATAATGACATATTGGAAAACCAAAATGACGTAGACTACTTTAAAGATTCAGAGTCTTTCAAGAAGCATTACGCCACGGTACTTGTACAGCTAAAGGAAGCCAGTGGGCAGGTTTCTTCTGCCCTGCTTAATTTGAGGCAACGAAATACTTACATGGGAAACTCTCCATCACCATGGGTGAAGGCCCCAGCAAGTTTCAGTGTTCAAGGTGATCTTCCATGTGCGCTAGATGGTTCCCTGACGCAAGAGTTAGCATCAAGTGTTATTGAAATTATCAAAGGATCCAGGCTAAGAGCGCATGCCATGGTAGATGCTGCAATTCAGACATTATCTTCAACAAAAGAAGGTGAAGATGCTTTCATTAAGATAGGGCAAGCATTGGATTCCATTGACTATCAGCAGTTGGCCTCCAACTCTAAAGTGACTGGCAGTTTTGGTCACCATGATCAGTCAACTTGCTGCGCATCAGAAACTCTACAGAGTGATACATCAGGTCTGAAATTGGCGAATGATTCCCACAAAGTTGATATTCAAATTCCTTCTGAGCTCATTACATCCTGTGTTGCTACTTTGATCATGATCCAGACTTGTACTGAACGGCAATACCCACCAGCTGATGTTGCTCAGATATTAGATTCGGCCGTTAACAGCCTGCATCCTTGCTGTCCTCAAAATCTTCCTATATACAGGGAAATTAAGATGTGCATGGGACGAATTAAGACCCAGATTTTAGCTCTCATCCCAACTTGA 3396 0.4158 MAPTRKSRSVNKRFSGLNEASPDKDGINSNKNKNRKKKLSDKLGSQWSKEELERFYEAYRKHGKDWKKVSASVRNRSTEMVEALYNMNRAYLSLPEGTASVVGLIAMMTDHYNVLEGSDSDKESSDAPESQKHLKRKRGKVQLIFSKDSVQSHSVASNDGCLSLLKKRHFDGSQPRAVGKRTPRVPVSHSHKKFDRDFVSPIKRSLKSESNANDDEVAHVAALALTEASQRGGSPHISQTQCRRAEQKSSPVQSWEKMSKTARSKFHDASAGEECLEGSVESGEAENGEYARDTSPLMDMEGFGTVEVHQKGKKIYRKKERAENVRSYQLDDGGEACSGTEEGLYFNSLKEKVDSEVTNAKPEQFSPQDQRKRSKKLFFGDESSGLDALQTLADLSLMMPVSTMNSESSVQLKEERMTVDKDDKSALPESMFTSQNRDKLKPLGSKQKVLHAVPGIEASNSRKSKLGRSLENEINASAESKEHITPDRTGKRKRKSVASKAVSDGENKTMIEGKQSGQVFALPKQVKPVKSSESSLCSDPKDLTVSTAEIQLASEVSLPNKKRRRKMSLPKTFNMRDKSSENILKKQPSKYSSGLQDRASYLKGTLSGCLSSYMVRRWCTFEWFYSAIDYPWFAKREFMEYLNHVGLGNIPRLTHVEWSVIKSSLGKPRRFSEHFLREEIQKLEQYRESVRTHYTELRTGIRDGLPTDLARPLFVGQRVIAIHPKSREVHDGSVLTVDHDKCRVQFDRPELGVEFVMDIDCMPMNPVDNMPEALRGQIGAGRVSYVGKQLQINETSNFEGGVTCGSSVPLEKLPTPSSTLLKEDVNHAVAQTKVGTIDNVNTLQEAYAQPHHQAREADIRALSELTRALDKKEKLLMELRNANNDILENQNDVDYFKDSESFKKHYATVLVQLKEASGQVSSALLNLRQRNTYMGNSPSPWVKAPASFSVQGDLPCALDGSLTQELASSVIEIIKGSRLRAHAMVDAAIQTLSSTKEGEDAFIKIGQALDSIDYQQLASNSKVTGSFGHHDQSTCCASETLQSDTSGLKLANDSHKVDIQIPSELITSCVATLIMIQTCTERQYPPADVAQILDSAVNSLHPCCPQNLPIYREIKMCMGRIKTQILALIPT 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0188 1131 MobiDBLite consensus disorder prediction 407 438 - -
Acco06g0188 1131 SUPERFAMILY Homeodomain-like 42 90 IPR009057 -
Acco06g0188 1131 ProSiteProfiles Myb-like domain profile. 45 86 IPR001005 -
Acco06g0188 1131 ProSiteProfiles SANT domain profile. 42 79 IPR017884 -
Acco06g0188 1131 MobiDBLite consensus disorder prediction 1 44 - -
Acco06g0188 1131 Gene3D - 4 99 - -
Acco06g0188 1131 MobiDBLite consensus disorder prediction 474 501 - -
Acco06g0188 1131 MobiDBLite consensus disorder prediction 116 138 - -
Acco06g0188 1131 FunFam Protein ALWAYS EARLY 3 isoform A 3 99 - -
Acco06g0188 1131 MobiDBLite consensus disorder prediction 116 133 - -
Acco06g0188 1131 MobiDBLite consensus disorder prediction 228 289 - -
Acco06g0188 1131 Coils Coil 862 892 - -
Acco06g0188 1131 MobiDBLite consensus disorder prediction 474 510 - -
Acco06g0188 1131 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 81 IPR017930 -
Acco06g0188 1131 Pfam DIRP 623 724 IPR033471 -
Acco06g0188 1131 PANTHER LIN-9 1 1131 IPR010561 GO:0006351|GO:0017053
Acco06g0188 1131 SMART DIRP_2 624 725 IPR033471 -
Acco06g0188 1131 MobiDBLite consensus disorder prediction 26 44 - -
Acco06g0188 1131 MobiDBLite consensus disorder prediction 413 427 - -
Acco06g0188 1131 Pfam Myb-like DNA-binding domain 45 82 IPR001005 -
Acco06g0188 1131 MobiDBLite consensus disorder prediction 231 259 - -
Acco06g0188 1131 MobiDBLite consensus disorder prediction 260 274 - -
Acco06g0188 1131 SMART sant 43 91 IPR001005 -
Acco06g0188 1131 CDD SANT 47 81 IPR001005 -
Acco06g0188 1131 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0188 Acco-ChrAcco06 1283441 1291208 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Acco06g0188 DIRP 6.5e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco06g0188 06 1283441 1291208 Acco06g0188 06 1283441 1291208 ECH