Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0165 ATGAGTACAAGTCCGTTTAGCATTGCCGATTGTATGAAACGCCCCTATGTGCATTCAATGACAACAATTTATGCCGACTCCCTTGTAAAAGTGCACATTTTTCTTTATATGCTCCGAGGAAAACGAATTGATGATCTGGGTCCTCGATCCTGCAAGCAGAGCATCACCTGTACAAGAAGGATGGACCATCAAGGGCATAACCAGAACCAATCCATGGATCATCATCAACTGCCGTATGCTTCAAATCCATACCAGGCGACCCACATAACTGCAACACCGGGATCAGCTGTGACATCAGTTGGGAACATTCAGTACAGTGGTCAGCCTGCCGGAGCTCAGCTTGGACAACACCAACTTGCTTATCAGCACATTCACCAGCAACAGCAGCAGCAACTTCAGCAACAACTCCAAACCTTTTGGGCTAATCAGTACCAAGAAATCGAGAAGGTGACTGATTTCAAAAATCACAGCCTTCCCTTGGCGAGGATCAAGAAGATTATGAAAGCTGATGAAGATGTTCGAATGATATCAGCTGAGGCGCCAGTCATATTTGCAAGGGCATGTGAGATGTTTATACTAGAGCTAACTCTGCGTTCTTGGAATCACACTGAAGAGAACAAAAGGAGAACACTTCAGAAGAATGACATCGCTGCTGCAATCACGAGGACTGATATATTTGATTTCTTGGTTGATATCGTGCCGCGAGAGGATTTGAAAGATGAAGTGCTTGCATCTATACCAAGAGGGACAATGCCTGTGGCAGGGCCTGCTGATGCTCTTCCTTACTGTTACATGCCACCTCAGCATGCACCACAAGCAGGCGCGTCTGGCGTCATAATGGGTAAGCCTGTGATGGACCCGACCATGTATGCCCAACAGTCTCATCCCTACTTGCCGCAGCAGATGTGGCCACAGCCCCCAGATCAGCAACGGCAACCAACTCCTGATCGTTAA 954 0.4738 MSTSPFSIADCMKRPYVHSMTTIYADSLVKVHIFLYMLRGKRIDDLGPRSCKQSITCTRRMDHQGHNQNQSMDHHQLPYASNPYQATHITATPGSAVTSVGNIQYSGQPAGAQLGQHQLAYQHIHQQQQQQLQQQLQTFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVAGPADALPYCYMPPQHAPQAGASGVIMGKPVMDPTMYAQQSHPYLPQQMWPQPPDQQRQPTPDR 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0165 317 MobiDBLite consensus disorder prediction 293 317 - -
Acco06g0165 317 MobiDBLite consensus disorder prediction 300 317 - -
Acco06g0165 317 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 116 258 - -
Acco06g0165 317 SUPERFAMILY Histone-fold 125 229 IPR009072 GO:0046982
Acco06g0165 317 FunFam Nuclear transcription factor Y subunit gamma 122 235 - -
Acco06g0165 317 Gene3D Histone, subunit A 119 235 IPR009072 GO:0046982
Acco06g0165 317 Pfam Core histone H2A/H2B/H3/H4 123 220 IPR007125 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0165 Acco-ChrAcco06 1154504 1158138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0165 61 303 CCAAT-HAP5 Transcription Factor Family AT1G08970 61.475 2.67e-87 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Acco06g0165 CBFD_NFYB_HMF 8.1e-18 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco06g0165 06 1154504 1158138 Acco06g0165 06 1154504 1158138 CCT
Acco06g0165 06 1154504 1158138 Acco06g0165 06 1154504 1158138 ECH