Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0160 ATGTCTCCCCTCCTCTTCCTCCTCCTCCTCCTCCTTCCTCCTCCATTCCCTCTGGCCTGCGCCCAGGTCGGCAACACTGGTCCCAACGGCTCTTACTACAACTCCTACAGCCCCTCCCTCGCCTTCATTATCGTCATTTTAATCGTCGGCCTCTTCCTCGCCGGCGTCTTCTCCATCTATATCCGCCACTGCGGCCGATCCTCTAGCACTTCCGTCCCCAACCTCACCGCTCGCCCCGGACGTCAGCCTCGGGGTCTTGATGATGCCGTCATCAACTCTTTTCCCACACTTGACTACTCCGCCGTTAAGATTCACAAGATTGGAAAAGGTGCCCTGGAATGCGCCGTCTGCTTGAACGAGTTCGACGACTCCGAAACGCTCCGTCTCATCCCCAAGTGCGACCACGTCTTCCATTCCGACTGCATTGACGAGTGGCTGGCCTCCCACACCACCTGCCCCGTTTGCAGAGCCGACCTCACCCCTCAGCCTGCCGGCTCTGTTCATCCACTTCCTGTCCCGGACTCTCGCGCTGATATCGAATCCCAAAATGACGCTCCCGAAAGTGAGGCCGCCCAGCCGGACGTCGCGGGTTTCAACCAGAAGCTGAACCGAAGCCGTAGTCAGACGGTAAGGTGGGCGAGGTCTCACTCCACTGGGCACTCGCTGGTTCAGCCGGGGGAAAACACCGACAGGTACACTCTGAGGCTGCCGGCTGACGTCAGGAATCAGCTGCTAAATCAGAAATTTCATAGGTCCACAAGCTTGGTAGTTTTGCCCAGGGAGAGTAGTTCGAGGAGGGGGTATCGAACCGGAGGTGAGGGTAGTGGCGGTGGAAGGTTTTCAAGGCGACTGAGCCGCGGCTTTAAATCAGACCGATGGGTCTTTACTATGGCGCCGCCCTTCTTAGTGAGGGCGTCGTCGCTCAGGTCTCCGAAGGTTGCAAGTAACAGTGCCGCCGTTGAAGAGACCTCCTCCAACCCCATCACGCCACCATCGGCGGGGCGCTCGTCCCGGCCTCCGGTTTAG 1026 0.5897 MSPLLFLLLLLLPPPFPLACAQVGNTGPNGSYYNSYSPSLAFIIVILIVGLFLAGVFSIYIRHCGRSSSTSVPNLTARPGRQPRGLDDAVINSFPTLDYSAVKIHKIGKGALECAVCLNEFDDSETLRLIPKCDHVFHSDCIDEWLASHTTCPVCRADLTPQPAGSVHPLPVPDSRADIESQNDAPESEAAQPDVAGFNQKLNRSRSQTVRWARSHSTGHSLVQPGENTDRYTLRLPADVRNQLLNQKFHRSTSLVVLPRESSSRRGYRTGGEGSGGGRFSRRLSRGFKSDRWVFTMAPPFLVRASSLRSPKVASNSAAVEETSSNPITPPSAGRSSRPPV 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0160 341 Pfam Ring finger domain 113 156 IPR001841 -
Acco06g0160 341 FunFam E3 ubiquitin-protein ligase ATL6 74 162 - -
Acco06g0160 341 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 34 197 - -
Acco06g0160 341 SMART ring_2 114 155 IPR001841 -
Acco06g0160 341 MobiDBLite consensus disorder prediction 306 341 - -
Acco06g0160 341 CDD RING-H2_EL5-like 113 156 - -
Acco06g0160 341 MobiDBLite consensus disorder prediction 260 283 - -
Acco06g0160 341 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Acco06g0160 341 MobiDBLite consensus disorder prediction 198 228 - -
Acco06g0160 341 MobiDBLite consensus disorder prediction 166 228 - -
Acco06g0160 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 162 IPR013083 -
Acco06g0160 341 SUPERFAMILY RING/U-box 108 162 - -
Acco06g0160 341 SMART FANCL_C_2 110 164 - -
Acco06g0160 341 MobiDBLite consensus disorder prediction 309 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0160 Acco-ChrAcco06 1123825 1124850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0160 3 305 Rapid Response to Elicitors AT3G05200 43.939 6.81e-75 234