Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0159 ATGTGTCTCCCGGAGGGAGAGGGAGACAGCCAGACGTCGATGGCGCTGGAAGCCTTTGTTTTCCCTCAGGAGCACTCCTTTGGCTATGGCGCTTCCAAAGACTTCTATCCTCTCTGGCCCTTTCACGAGGATTTCAACCTTCCCAAACACCAAGACCACCTCAATTTCCTCCACTGCCAAACAGAACCTTATGGCTTCGGAGACTGGAGCTCCTCTGTGTTGCCCCACTCCAGCGAACTCGTACATGATGTACAGAATCATCACGCCGCCTCTGACACCAGTAACAACCCAACACCCTCGTCTGAAGCCTCCCATTCTCGTCCCAAGAGACGCAGGGCCAGGACCCGCAAGAACACGCAGGACATCGAGAACCAGAGAATGACTCACATTGCCGTGGAGCGCAATCGGAGAAAGCAGATGAACGACTATCTCTCTGTTCTTCGCTCTCTCATGCCCGATTCCTATGTCCAAAGAGGGGATCAGGCTTCCATAATTGGAGGGGCAATCAACTTTGTGAAGGAGCTGGAGCAGAGGCTTCAGTTTCTGGGCGGCCAGAAAGTAACAGGGGCCGAATCTCAGAGCATGCCCTTCTCCGAGTTCTTCTCGTTTCCTCAGTATTCGACGAGCTCCAGCGGTGAGTGTTCGGCGGCCAAAGTTGGGGAGGTCTCGTCGGAGGCGAGTATCGCAGATATAGAAGTGACGGTGGTGGAGAGCCACGCGAATCTGAAAATAAGGACGAGGAAGAGGCCAAAGCAGCTGTTGAAGATGGTGTCCGCGTTGTACAACATGCGTCTCACAATCTTGCATCTCAATGTGACGACCACTGCCGATATTGTGCTCTACTGCATCAGCGTCAAGTTGGAAGAAGAGTGCAAGCTGGGATCAGTGGAGGACATAGCCGGGGCTGTGCACCACGCGTTGGAGATGATCGAACAAGTGAGTGCACAGAATGAAGATCCTAACACCAGCTAG 972 0.535 MCLPEGEGDSQTSMALEAFVFPQEHSFGYGASKDFYPLWPFHEDFNLPKHQDHLNFLHCQTEPYGFGDWSSSVLPHSSELVHDVQNHHAASDTSNNPTPSSEASHSRPKRRRARTRKNTQDIENQRMTHIAVERNRRKQMNDYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQRLQFLGGQKVTGAESQSMPFSEFFSFPQYSTSSSGECSAAKVGEVSSEASIADIEVTVVESHANLKIRTRKRPKQLLKMVSALYNMRLTILHLNVTTTADIVLYCISVKLEEECKLGSVEDIAGAVHHALEMIEQVSAQNEDPNTS 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0159 323 Gene3D - 114 187 IPR036638 GO:0046983
Acco06g0159 323 MobiDBLite consensus disorder prediction 87 103 - -
Acco06g0159 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 189 IPR036638 GO:0046983
Acco06g0159 323 PANTHER MAX DIMERIZATION, MAD 71 312 - -
Acco06g0159 323 MobiDBLite consensus disorder prediction 85 125 - -
Acco06g0159 323 Pfam Helix-loop-helix DNA-binding domain 125 176 IPR011598 GO:0046983
Acco06g0159 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 124 175 IPR011598 GO:0046983
Acco06g0159 323 SMART finulus 130 181 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0159 Acco-ChrAcco06 1110073 1111212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0159 14 287 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 48.013 1.33e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco06g0159 HLH 2.2e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco06g0159 06 1110073 1111212 Acco06g0159 06 1110073 1111212 CCT
Acco06g0159 06 1110073 1111212 Acco06g0159 06 1110073 1111212 ECH