LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco06g0093	ATGGCGAGAGAGCTCCTGCAACTTTATCTGCTGCTTCTCCTTCTTCTCCCCCCTCTGCAACAGACTCCTTCTGCTCTTCCTCCGCTCATGTCCAAGCCTGCTTTCCCACTCGAGGAAAATTTTATTATTGATCACATGGAGCAGTATGAAGTACTGGAGCAAATTGGAAAAGGTGCTTTTGGCTCCGCTCTTCTTGTGCGGCATAAGCATGAGAAAAAGAAATATGTGCTGAAGAAAATTCGCCTTGCTCGCCAAACTGAGCGGTCTCGTAGATCTGCACATCAGGAGATGGAGCTAATCTCTAAATTAAGAAATCCATTTATTGTTGAGTATAAAGATTCCTGGGTAGAAAAGGGGTGCTATGTGTGCATTATTATAGGTTATTGTGAGGGCGGAGATATGGCAGAAGCTATAAAGAAGGCTAATGGTGTTTTTTTTCCTGAGGAGAAACTTTGTAAGTGGCTTGTTCAACTTCTCATGGCCCTCGACTACTTACACCTTAACCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTTTTGACAAAAGATCAAGATATACGCCTTGGTGATTTTGGACTTGCCAAAATATTGACTTCAGATGATCTTGCTTCCTCTGTTGTCGGAACTCCTAGTTACATGTGCCCTGAGCTCTTGGCTGATATTCCTTATGGTTCTAAATCAGATATTTGGTCCTTGGGATGCTGTATATATGAAATGGCAGCTCACAAGCCCGCTTTTAAAGCATTTGATATACAGGCACTAATCAACAAGATTAACAAGTCTATAGTGGCTCCACTGCCAACAACGTATTCTGGTGCATTTCGGAGTCTTGTTAAAAGCATGCTGCGGAAAAATCCTGAGCTTAGACCTAGTGCTGCGGAGCTGCTTGGACACCGGCATCTTCAACCTTATATTCACAAGATCCATCTAAAACTTAATAGCCCCAGGCGAAGTACCCTGCCAGTTCACTGGTCAGAATCCAACTACATGAGGAAAACTAGATTTCTGGAGTCAGAAGATGATCCTGTTTCAGTATACAGAGATAAGCTACGTTCTCTTGGCTATGATCTGACTCCTAATCCTAGCATATCTGGTGCTGAGCAAGATTCTGTTTGCTCTACCCTAGAAATAGATTGTACTCCAGATCATTTGAATAAAAGGTTGGCAGAGCATTGTATTGGAGACGGCCTCGAGGTGAAGTCAATCTGCAAGCCTATTGTTTCAAGGACATCTAGTTTCACTAAGACTCCAAGACATACCTCCATAAAAGCTTCTGCCACCTCTAAGACATCAAAGGAGCCCACAAAAAAGCGTGTGTCGATTACTACTCCAAGCAAAGCCAGACAATCAGTCTATAGAACTCGCAGAGTATCATTTCCATTGCATACAAGAAGTTCTGATCAACACTCTGGTCATGGGCCTGGTACTCTTAGCCATATAAAGTCGCCAGACATTTCAGTAAACTCTCCTAGAATTGATAAGATAGCTGAATTCCCACTAGCGTCATATGAAGATCCACTTTTTCCCGTCTATAGAACTCCAACCTCAGCCCAGGGTTCCTCAGGCTCTGCAACTTGTGGTGATCGTTCAATCATGAAGGATAAATGCACGGTTCAAACATGTGATAGAGCCTCTGTGAAGCATCAGCTGACAGATTCATGGCAGGGAATCAAGCTAAACACGTTTCGGGAAAATGCCAAGGATAAAAGTGGCTCCTCTGATCGAAATGCAACCGCTGGAGCATCAAGCCGTGCCTCTTCAGACATGTGCCGCCGGCAGTTTGACACTTCATCATTCCAACAAAGGGCTGAAGCCTTGGAAGGGTTGCTTGAATTTAGTGCAAGATTGCTACAACATGAAAGGTATGAAGAACTAGGGGTTTTATTGAAACCATTTGGGCCAGGGAAGGTTTCTCCAAGGGAAACTGCTATCTGGTTGAGTAAGAGCTTCAAAGAGAACACACTCAACAGTGAAGAACCCCTATAA	1992	0.4342	MARELLQLYLLLLLLLPPLQQTPSALPPLMSKPAFPLEENFIIDHMEQYEVLEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTERSRRSAHQEMELISKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKANGVFFPEEKLCKWLVQLLMALDYLHLNHILHRDVKCSNIFLTKDQDIRLGDFGLAKILTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMAAHKPAFKAFDIQALINKINKSIVAPLPTTYSGAFRSLVKSMLRKNPELRPSAAELLGHRHLQPYIHKIHLKLNSPRRSTLPVHWSESNYMRKTRFLESEDDPVSVYRDKLRSLGYDLTPNPSISGAEQDSVCSTLEIDCTPDHLNKRLAEHCIGDGLEVKSICKPIVSRTSSFTKTPRHTSIKASATSKTSKEPTKKRVSITTPSKARQSVYRTRRVSFPLHTRSSDQHSGHGPGTLSHIKSPDISVNSPRIDKIAEFPLASYEDPLFPVYRTPTSAQGSSGSATCGDRSIMKDKCTVQTCDRASVKHQLTDSWQGIKLNTFRENAKDKSGSSDRNATAGASSRASSDMCRRQFDTSSFQQRAEALEGLLEFSARLLQHERYEELGVLLKPFGPGKVSPRETAIWLSKSFKENTLNSEEPL	663

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco06g0093	663	Pfam	Protein kinase domain	49	302	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco06g0093	663	SMART	serkin_6	49	303	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco06g0093	663	MobiDBLite	consensus disorder prediction	416	431	-	-
	Acco06g0093	663	MobiDBLite	consensus disorder prediction	416	487	-	-
	Acco06g0093	663	Gene3D	Transferase(Phosphotransferase) domain 1	129	319	-	-
	Acco06g0093	663	MobiDBLite	consensus disorder prediction	439	454	-	-
	Acco06g0093	663	MobiDBLite	consensus disorder prediction	574	591	-	-
	Acco06g0093	663	ProSiteProfiles	Protein kinase domain profile.	49	307	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco06g0093	663	PANTHER	SERINE/THREONINE-PROTEIN KINASE NEK	46	613	-	-
	Acco06g0093	663	FunFam	Serine/threonine-protein kinase Nek2	46	128	-	-
	Acco06g0093	663	MobiDBLite	consensus disorder prediction	461	487	-	-
	Acco06g0093	663	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	170	182	IPR008271	GO:0004672\|GO:0006468
	Acco06g0093	663	ProSitePatterns	Protein kinases ATP-binding region signature.	55	78	IPR017441	GO:0005524
	Acco06g0093	663	FunFam	Serine/threonine-protein kinase Nek3	131	376	-	-
	Acco06g0093	663	CDD	STKc_Nek	48	298	-	-
	Acco06g0093	663	Gene3D	Phosphorylase Kinase; domain 1	31	128	-	-
	Acco06g0093	663	MobiDBLite	consensus disorder prediction	567	591	-	-
	Acco06g0093	663	SUPERFAMILY	Protein kinase-like (PK-like)	46	351	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco06g0093	Acco-ChrAcco06	639327	646468	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco06g0093	21	306	MAP Kinase Kinase Gene Family	AT4G26070	33.779	4.88e-36	137

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NEK	Acco06g0093		Pkinase	9.3e-64	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Acco06g0093	06	639327	646468	Acco06g0093	06	639327	646468	CCT
	Acco06g0093	06	639327	646468	Acco06g0093	06	639327	646468	ECH