Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0058 ATGGCGTCTTCCGTGTCCTCGCAATTCACCAACACCAACGCTTCATATTTCCCCGGGCCCTTTCACCTTCAGCAATCCCTAGCGACGCAGTATGCGACACCATATGTGGCAGCTTCTGCGGCATCGCCAGCACTGCAAATTCCTTCTGCCTCCCTTTATCCTTCTCCGGCACCGGTCGCTGGTTTGTATCCTCTGCCACAGTGTCAGCAGGCGCAGCAGCTGTTTCAAAGGGATGCGCAGACTAATACACCTGAGGCTCTTGAGAGTGTCAAGGCGGCCATTGCAAATAACGAGATTGAGCTTAAGGCGGAGACCAAAAAGAAAGCAGTTCCTCGCAAAGCTGCTGGCCAAACATGGGAGGATCCCACCCTTGCAGATTGGCCAGAAAATGACTATCGGCTGTTTTGTGGTGATCTTGGTAATGAGGTGAATGATGATGTTCTTTCAAAAGCATTTTCTCGATTTCCTTCCTTTAACATGGCACGAGTAAACAAACGAACTGGAAAAACAAAGGGTTATGGATTTGTAAGCTTTGCTAATCCTGCTGACCTTGCTGCTGCTCTTAAAGAAATGAATGTTGCATGTTGTGGAGAGAGTAGTGTGTTTTTGTTAAAGTTGGCTGCGGCACTGGCCAGTTGGCGTTCTTAG 648 0.4877 MASSVSSQFTNTNASYFPGPFHLQQSLATQYATPYVAASAASPALQIPSASLYPSPAPVAGLYPLPQCQQAQQLFQRDAQTNTPEALESVKAAIANNEIELKAETKKKAVPRKAAGQTWEDPTLADWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVNKRTGKTKGYGFVSFANPADLAAALKEMNVACCGESSVFLLKLAAALASWRS 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0058 215 Coils Coil 87 107 - -
Acco06g0058 215 SMART rrm1_1 133 204 IPR000504 GO:0003723
Acco06g0058 215 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 192 IPR000504 GO:0003723
Acco06g0058 215 FunFam RNA-binding protein 42 67 211 - -
Acco06g0058 215 Gene3D - 65 201 IPR012677 -
Acco06g0058 215 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 132 192 IPR000504 GO:0003723
Acco06g0058 215 SUPERFAMILY RNA-binding domain, RBD 115 192 IPR035979 GO:0003676
Acco06g0058 215 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 55 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0058 Acco-ChrAcco06 430546 432469 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0058 134 203 Eukaryotic Initiation Factors Gene Family AT1G71770 30.986 3.16e-07 48.5