Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0048 ATGGAGAAAGCATCAGCCTTTCTTTTGTTGGCTTCTTACATCTTCGTCTCCGTTTCCGCTATCGATAGTGATTATGCGCAGTGCAATTGTGATGAAGAAGGGCTTTTGAGCATACATAAAATTCTAGAGAGCCAAAGAGTCAGTGACTTCTTTATTGCCATAGCATATTTTTCGATCCCCCTTGAACTCCTCTACTTCGTTAGTCGCTCCAACCTTCCCTTCAAATGGGTGTTCCTCCAATTCATTGCATTCATAGTCCTTTGTGGTTTGACGCATTTGCTTAATGCATATACTTATTACGGACCTCATTCCTTCCAGTTGGTGCTCTCCCTTACAATTGCTAAACTCCTTACAGCTCTGGTCTCCTGCGCAACCGCAATTACCCTTTTTACTCTGATTCCTCTCCTTCTCAAAATCAAAGTAAGGGAGCTCTTTTTGAAGCAGAACGTGTTGGAGTTGGACCAGGAGATTGGAATGATCAAAAGACAAAAAGAAGCAAGCTGGCATGTTCGGATGCTAACTCGGGAAATTAGGAAGTCTCTGGATAAGCATACAATCTTGTACACCACCCTTGTTGAGCTTTCTAAATCATTGGATTTGCATAACTGCGCTGTTTGGATGCCAAATGAGGAGGGACGAGAAATGTACTTAACCCATGAGTTGAAAACAAGCTCCCCCGAGATGTTTCACCATTCCATTCCCATAAATGACCCGGATGTCATAGAGATCAGAGAAAGTAAAGGGGTAAGGATTTTGAGGCCCGAATCAGCACTAGGAGCTGCAAGTAAGGGGGGATCTGGGGAGTCAGGTGCTGTTGCGGCTATTCGTATGCCGATGCTTCATGTTTCAAACTTTAAAGGAGGGACGCCTGAGTTAGTCGATACATCCTATGCTATTCTGGTTTTGGTTCTTCCGAATTCAAACTCTAGTGCTTGGAGCCACCAAGAGATGGAGATTGTAGAGGTAGTTGCTGATCAGGTCGCTGTAGCCCTGTCTCATGCATCTGTTCTTGAAGAGTCTCAGCTCATGAGGCAGAAACTGGCAGAGCAAAACCGAGCTTTGCAACAGGCTCAACAGAATGCAATGATGGCTAGTCAGGCAAGGAAGTCATTTCAGAAAGTGATGAGTCATGGTATGCGCAGGCCTATGCATTCAATTCTGGGCCTGCTTTCCATGTTTCAAGAGGACAATTTGAGATTTGAGCAAAAGGTTATTGTTGACACAATGATCAAAGTTGGCCATGTTCTCTCGAGTTTGATCAATGATGTGATGGAGATTTCGGTAAATGATAAAGGAAGCTTCCGGCTGGAGATGAAACCTTTTGATTTACATTTGATGATGAGAGAAGCTGCTTGTATTGCCAAGTGTTTGTGTGTGTATAAAGGCTTTAATTTTAAAATTGAAGTCCAGAAGTCGTTGCCCGATCTCGTGATAGGGGACCAGGCAAGGGCTTTTCAAGTAATTTTGCATATGATTGACTATTTAGTGAACATATATGATGGAGAAAGGACTTTCATTTTTCAAGTTTATCTTGAAAATGATAATGGGAATAAGGATGATAATTCTTTGGGAATATGGAGATCAGGCATGCAAAATGATTATGTATATATAAAATTTGATTTTCAGATAACTGGTACAAGTTCACGGTCAGATGGATCAACTTCAACAAGACGCTATGCTGGTGGAAGGCACCACAGCAATGAATCTAATGAGGGCTTAAGCTTCAGCATGTGCAAAACGCTGGCTCAGATGATGCAAGGCAATATCTGGCTATCACGGAATGCTCTAGGATTGGCACAAAGCATGACACTTGCTCTCAAGTTCCAGATAGGACTATCTCATGGAAGATCCATTTTAGCACCTAAAGATTCTCTGGACTCTCGGTTCAGAAGCCTCAAGGTTTTGTTAACCGATGACGATGATGTAAACAGGACAGTGACAAAGAAACTTCTTGAGAAGTTAGGTTGCCAAGTAACTGCAGTTTCATCAGGGTTTGAATGCCTGGGTGCCGTAAGTGCATCTGGGAACACATTCAAAGTTATCCTTTTGGATCTGCACATGCCTGAAATGGATGGTTTTGACGTGGCTATGAGGATACGGAAGTTCCACAGTCGCAACTGGCCCTTGATTATTGCTCTCACGGCAAGTGCCGAAGAAGATGTGATGGATAGATGCCTACACGTTGGAATGAATGGATTAATTCGAAAACCTATTCTTCTCTCAGAGATAGCAGATGAACTACGAAGAGTCCTGCAACGCGCCGGCGAAAAATTGTGA 2277 0.43 MEKASAFLLLASYIFVSVSAIDSDYAQCNCDEEGLLSIHKILESQRVSDFFIAIAYFSIPLELLYFVSRSNLPFKWVFLQFIAFIVLCGLTHLLNAYTYYGPHSFQLVLSLTIAKLLTALVSCATAITLFTLIPLLLKIKVRELFLKQNVLELDQEIGMIKRQKEASWHVRMLTREIRKSLDKHTILYTTLVELSKSLDLHNCAVWMPNEEGREMYLTHELKTSSPEMFHHSIPINDPDVIEIRESKGVRILRPESALGAASKGGSGESGAVAAIRMPMLHVSNFKGGTPELVDTSYAILVLVLPNSNSSAWSHQEMEIVEVVADQVAVALSHASVLEESQLMRQKLAEQNRALQQAQQNAMMASQARKSFQKVMSHGMRRPMHSILGLLSMFQEDNLRFEQKVIVDTMIKVGHVLSSLINDVMEISVNDKGSFRLEMKPFDLHLMMREAACIAKCLCVYKGFNFKIEVQKSLPDLVIGDQARAFQVILHMIDYLVNIYDGERTFIFQVYLENDNGNKDDNSLGIWRSGMQNDYVYIKFDFQITGTSSRSDGSTSTRRYAGGRHHSNESNEGLSFSMCKTLAQMMQGNIWLSRNALGLAQSMTLALKFQIGLSHGRSILAPKDSLDSRFRSLKVLLTDDDDVNRTVTKKLLEKLGCQVTAVSSGFECLGAVSASGNTFKVILLDLHMPEMDGFDVAMRIRKFHSRNWPLIIALTASAEEDVMDRCLHVGMNGLIRKPILLSEIADELRRVLQRAGEKL 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0048 758 MobiDBLite consensus disorder prediction 546 571 - -
Acco06g0048 758 FunFam Ethylene receptor 4 334 428 - -
Acco06g0048 758 Gene3D - 333 430 - -
Acco06g0048 758 PIRSF Ethylen_sen_hybr_HK 1 758 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Acco06g0048 758 CDD HATPase_ETR2_ERS2-EIN4-like 473 606 - -
Acco06g0048 758 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 24 755 - -
Acco06g0048 758 SMART gaf_1 182 341 IPR003018 GO:0005515
Acco06g0048 758 SMART REC_2 632 747 IPR001789 GO:0000160
Acco06g0048 758 Pfam His Kinase A (phospho-acceptor) domain 369 428 IPR003661 GO:0000155|GO:0007165
Acco06g0048 758 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 352 432 IPR036097 GO:0000155|GO:0007165
Acco06g0048 758 SUPERFAMILY GAF domain-like 185 334 - -
Acco06g0048 758 SUPERFAMILY CheY-like 629 753 IPR011006 -
Acco06g0048 758 CDD HisKA 365 427 IPR003661 GO:0000155|GO:0007165
Acco06g0048 758 SMART HisKA_10 367 432 IPR003661 GO:0000155|GO:0007165
Acco06g0048 758 Pfam GAF domain 184 331 IPR003018 GO:0005515
Acco06g0048 758 Pfam Response regulator receiver domain 634 746 IPR001789 GO:0000160
Acco06g0048 758 Gene3D - 431 611 IPR036890 -
Acco06g0048 758 Gene3D - 160 332 IPR029016 -
Acco06g0048 758 ProSiteProfiles Response regulatory domain profile. 633 751 IPR001789 GO:0000160
Acco06g0048 758 FunFam Ethylene receptor 630 754 - -
Acco06g0048 758 MobiDBLite consensus disorder prediction 546 560 - -
Acco06g0048 758 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 421 594 IPR036890 -
Acco06g0048 758 ProSiteProfiles Histidine kinase domain profile. 374 608 IPR005467 -
Acco06g0048 758 Coils Coil 337 367 - -
Acco06g0048 758 CDD REC_ETR-like 632 747 - -
Acco06g0048 758 Gene3D - 631 757 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0048 Acco-ChrAcco06 366455 370940 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0048 22 756 Miscellaneous Gene Families AT3G04580 63.320 0.0 929
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Acco06g0048 GAF 4.6e-11 CL0161