Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0047 ATGGATCGCTCTCTCTCTCCTTCCGGCAGATTCTACAATCCCTGCTGTTCTCCATCTTTGTTGTCGTCTTCCTCAGCTTTCGCATCTCCGTCGCCGGCTGCTCCTCCATTCAGAGTATTATTTTTGTCCGCGAAAAGTGAAAATTCCGCCAAAGTCCACACTGCGCACCACTCTAGCCCCCTGGTCTCCCGTGGTCTCGCTTGTCCGAAAATGTTGAAGCTGTCCCGCTTGTTCGCTTCCAGGCATCAGGTATCAGAAACAATGTTAACTCAGAAAGCTGATCTTAGAGACAGTCTATGGCGTCTGTGTGGTTCTACTACCCATTCAGCTGGAATTTCTACTGTGGCAAATAATTATTCCGCTAAAGGATATACTTCAAGTCAGATATTTGTTCCGTATTCTGTTTTCAAGGGAAAAGCTGCACTCTCTCTGAGTCCCCGACTTCCAACTTTCACTAAGTTGGCTTCTGGTTCTGTTGTAATTGATCGTCGTGGCACAATGATGATGACTTTTGTACCCGCTCTTGGTGAACGCAAATATGATTGGGAGAAGAAACAGAGATTTGCTCTTTCAGCAACGGAGGTTGGTTCTTTGATAAGCATGGGCCCCACAGGTTCATGTGAATTCTTTCATGATCCTGCAATGTTATCAAGTAATGCTGGTCAAGTGAGGAAGAGCTTATCAATCAAGCCACATGCAGACAGCTCTGGCTACTTTATGTCTTTGTCTGTTGTCAATAACATTTTAAAAACCAAAGAATACTTGTCTGTTCCAGTCACAAGTGCTGAGTTTGCTGTGATGAAGACTGCCTGCAGCTTTGCGTTGCCGCACATTATGGGTTGGGATCGTCTGACTCATGATCCATCTGGAGCCATGCATGGTCAGCAATCAAAGGTGGACCCGCAAGGTGTAGACTTGGAGTGGTCAAAGTGA 933 0.4598 MDRSLSPSGRFYNPCCSPSLLSSSSAFASPSPAAPPFRVLFLSAKSENSAKVHTAHHSSPLVSRGLACPKMLKLSRLFASRHQVSETMLTQKADLRDSLWRLCGSTTHSAGISTVANNYSAKGYTSSQIFVPYSVFKGKAALSLSPRLPTFTKLASGSVVIDRRGTMMMTFVPALGERKYDWEKKQRFALSATEVGSLISMGPTGSCEFFHDPAMLSSNAGQVRKSLSIKPHADSSGYFMSLSVVNNILKTKEYLSVPVTSAEFAVMKTACSFALPHIMGWDRLTHDPSGAMHGQQSKVDPQGVDLEWSK 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0047 310 MobiDBLite consensus disorder prediction 286 310 - -
Acco06g0047 310 Pfam Whirly transcription factor 135 269 IPR013742 GO:0003697|GO:0006355|GO:0006952
Acco06g0047 310 SUPERFAMILY ssDNA-binding transcriptional regulator domain 127 289 IPR009044 GO:0003677|GO:0006355
Acco06g0047 310 Gene3D Transcriptional Coactivator Pc4; Chain A 120 293 IPR009044 GO:0003677|GO:0006355
Acco06g0047 310 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 79 310 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0047 Acco-ChrAcco06 357022 364228 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0047 126 310 Whirly Transcription Factor Family AT1G71260 68.783 2.66e-89 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Acco06g0047 Whirly 8.9e-57 CL0609