Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g3039 ATGATTAGAAGCTGTCCCGCCAACCTGGAGTTGGAAAGCCTGGTGGGGTCAATAGCGGGTGATGACGTGTTATCAAGTAGGCTGCTTGATATGATGGCTGCAAGCTGGGATGGAAGTAATGACCCTGGCAGCCAGTCAGACGAGAGCTATCATTTTGAGAGGCTGCATATTGAGCCCATGTATGATGCTTTTGTATGTCCACTGACAAAGCAAGTAATGCATGATCCTGTTACGTTAGAAACTGGACAGACTTTTGAACGTGAAGCAATTGAAAAATGGTTCAAAGAATGCAAGGAGAGTGGGCGCAAACTAGTTTGCCCTTTGACTCTGAAAGAACTAAAAAGTGCAGAACTAAATCCCAGTATTGCTTTGCGTAACACCATTGAAGAGTGGACTGCAAGGAACGAAGCGGCACAGCTGGACATGGCTCGTAGGTCATTGAATATGGGTAGTCCTGAAAATGATGCATTACAGGCTTTGCATTATATCCAACATATCTGCCAAAGAAGTCGGTCTAATAAGCACACTGTCCGTAGTGCGGGGCTTATACCCATGATTGTTGACATGTTGAAGAGCAGCAGCCGTAAGGTTCGTTGTACAGCTTTGGGAACCCTTAGAATTGTCGTAAAGGAGGACAATGAGAATAAGGAATTGTTGGCTGAAGGGGACACTGTGCGTACAATAGTAAAATTCCTTTCTCATGAACTCTCTAAAGAAAGAGAGGAAGCCGTCTCTTTGCTTTATGAGCTCTCAAAATCAGAAACTCTGTGTGAGAAGATAGGTTCAATCAATGGGGCTATTCTTATATTAGTTGGAATGACAAGCAGCAAATCAGAAGATATTTTGACTGTTGAGAAGGCTGAAAAAACATTGGAGAATCTGGAAAAGTGTGAGAATAATGTGCGACAGATGGCTGAAAATGGTCGACTGCAGCCTCTTCTGACACAACTGCTTGAAGGTCCACCTGAAACCAAATTGGCCATGGCTGGATACCTTGGTGAGCTGGTTTTGAATAATGATGTAAAGGTCCTTGTAGCCAAAACCGTGGGTTCATCTCTGATCAATATAATGAAAAGTGGTAATATGCAGTCCAGAGAAGCTTCTCTGAAAGCTCTTAATCAAATATCATCCTGTGACCCAAGTGCAAAGGTTTTGATAGAGGCTGGAATACTTTCACCTCTTGTAAATGACCTTTTCTCTATGGGTCCTAATCAGCTTCCAATGCGACTAAAAGAAGTCTCTGCTACAATTCTTGCTAATGTTGTGAACTCAGGAGAAGACTTTGATTCCATCCCATTTGGACCAGATCACGAGACTCTGGTTTCAGAGGACATAGTTCATAATCTACTCCATCTTATAAGCAACACTGGTCCAGCTATTGAATGCAAACTTCTCCAAGTACTTGTTGGACTTACTAGTACTCCAACTACTGTTCTGAGTGTTGTTACAGCTATCAAAAGCTCTGGTGCGATTATCAGTCTTGTCCAATTTATTGAGGCTCCACAGAGAGATTTGCGTGTAGCATCCATAAAACTCCTTCAGAATTTGTCTCCCCTCATGGGCCAGGAATTGGCTGATGCATTACGTGGTTCAGTTGGACAACTGGGCAGTCTAATTAAAGTCATATCAGAAAATGCGGGAATTAGTGAAGAGCAGGCTGTAGCTGTTGGGCTTCTAGCTGATCTGCCTGAGAGGGATTTGGGGCTCACAAGACAGATGTTAGATGAAGGTGCCTTTCAATTGGTATACTCTAGAGTGATTACCATTAGGCAGGGAGAGATCAGAGGCAGTCGCTTTGTGACACCGTTTCTTGAAGGGCTTGTGAAGATTCTTTCAAGGCTTACATTTGTATTGGCTGATGAGCCTGATGCTATATCATTCTGCCGTGAGCATAGCCTTGCTGCACTATTTATTGAACTGCTTCAGTCCAATGGACTTGATAATGTACAGATGGTTTCTGCTATTGCTTTGGAGAATCTGTCCCAAGAATCAAAGAGTTTAACAAAATTACCTGAGATGCCATCTCCTGGCTTTTGCGCCTCAATATTTCCATGCCTTGGCAAACAGCCTGTCATAACAGGATTGTGTAGGCTCCACCGAGGGTTATGTTCATTAAAAGAAGCATTTTGTCTGATTGAAGGGCAAGCAGTACGTAAGTTAGTGGCCCTACTGGACCACACAAATGTAAACGTGGTTGAGGCAGCACTGGCAGCTTTATCTACTTTGTTAGACGATGGAGTTGACATTGAACAAGGGGTGATGGTTCTTTTTGAGGCAGACGGAATTAAACCTATACTTGATGTGTTACTTGAGAAACAAACAGAAAATCTGAGGCGGAGGGCAGTTTGGGTAGTTGAGAGATTGTTGCGAACTGATGATATAGCCTATGAAGTTTCTGGTGATCAGAATGTGGGTACCGCACTTGTTGACGCTTTCCAGCATGGTGACTATCGGACTCGACAGATTGCTGAGCGTGCTCTCAAGCATGTGGACAAGATTCCAAACTTCTCAGGAATTTTTCAGAACATCGGATAG 2535 0.4339 MIRSCPANLELESLVGSIAGDDVLSSRLLDMMAASWDGSNDPGSQSDESYHFERLHIEPMYDAFVCPLTKQVMHDPVTLETGQTFEREAIEKWFKECKESGRKLVCPLTLKELKSAELNPSIALRNTIEEWTARNEAAQLDMARRSLNMGSPENDALQALHYIQHICQRSRSNKHTVRSAGLIPMIVDMLKSSSRKVRCTALGTLRIVVKEDNENKELLAEGDTVRTIVKFLSHELSKEREEAVSLLYELSKSETLCEKIGSINGAILILVGMTSSKSEDILTVEKAEKTLENLEKCENNVRQMAENGRLQPLLTQLLEGPPETKLAMAGYLGELVLNNDVKVLVAKTVGSSLINIMKSGNMQSREASLKALNQISSCDPSAKVLIEAGILSPLVNDLFSMGPNQLPMRLKEVSATILANVVNSGEDFDSIPFGPDHETLVSEDIVHNLLHLISNTGPAIECKLLQVLVGLTSTPTTVLSVVTAIKSSGAIISLVQFIEAPQRDLRVASIKLLQNLSPLMGQELADALRGSVGQLGSLIKVISENAGISEEQAVAVGLLADLPERDLGLTRQMLDEGAFQLVYSRVITIRQGEIRGSRFVTPFLEGLVKILSRLTFVLADEPDAISFCREHSLAALFIELLQSNGLDNVQMVSAIALENLSQESKSLTKLPEMPSPGFCASIFPCLGKQPVITGLCRLHRGLCSLKEAFCLIEGQAVRKLVALLDHTNVNVVEAALAALSTLLDDGVDIEQGVMVLFEADGIKPILDVLLEKQTENLRRRAVWVVERLLRTDDIAYEVSGDQNVGTALVDAFQHGDYRTRQIAERALKHVDKIPNFSGIFQNIG 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g3039 844 SMART arm_5 297 337 IPR000225 GO:0005515
Acco05g3039 844 SMART arm_5 378 423 IPR000225 GO:0005515
Acco05g3039 844 SMART arm_5 703 744 IPR000225 GO:0005515
Acco05g3039 844 SMART arm_5 621 662 IPR000225 GO:0005515
Acco05g3039 844 SMART arm_5 212 252 IPR000225 GO:0005515
Acco05g3039 844 SMART arm_5 170 210 IPR000225 GO:0005515
Acco05g3039 844 SMART arm_5 748 790 IPR000225 GO:0005515
Acco05g3039 844 ProSiteProfiles U-box domain profile. 59 138 IPR003613 GO:0004842|GO:0016567
Acco05g3039 844 Pfam U-box domain 62 136 IPR003613 GO:0004842|GO:0016567
Acco05g3039 844 Gene3D - 350 517 IPR011989 -
Acco05g3039 844 Coils Coil 284 307 - -
Acco05g3039 844 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 146 IPR013083 -
Acco05g3039 844 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 181 223 IPR000225 GO:0005515
Acco05g3039 844 CDD RING-Ubox_PUB 61 118 IPR045210 -
Acco05g3039 844 SUPERFAMILY ARM repeat 483 841 IPR016024 -
Acco05g3039 844 SUPERFAMILY ARM repeat 153 475 IPR016024 -
Acco05g3039 844 Pfam Armadillo/beta-catenin-like repeat 172 206 IPR000225 GO:0005515
Acco05g3039 844 Gene3D - 603 833 IPR011989 -
Acco05g3039 844 Gene3D - 150 349 IPR011989 -
Acco05g3039 844 SUPERFAMILY RING/U-box 53 141 - -
Acco05g3039 844 SMART Ubox_2 63 131 IPR003613 GO:0004842|GO:0016567
Acco05g3039 844 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 49 840 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g3039 Acco-ChrAcco05 44877165 44881749 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g3039 33 844 U-box Gene Family AT1G76390 65.233 0.0 1041