LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco05g3007	ATGTCGCCGGCGGAGAACAGCAGGGGATTGAGTGCGGAGGAAGGCAGGCATTACCCTGCCCCACTCGCGGCGCACGAGGACGTGTCCAAGGACCCCACCTTATTCAGGGACACTCTCAGGCGTTTCCACTTCCTCATGGGTACCAAGTTCATGATTCCTGTGATTGGAGGGAAGGAACTGGATTTGCACGTTCTTTACGTGGAGGTTACGAGGAGGAGCGGTTATGAGAAGGTTGTGGCAGAGAAGAAATGGAGGGAAGTGGGGAATGTGTTCAGGTTCTCTCCCACTACAACCAGCGCTTCTTTCGTACTGAGGAAGCACTACATGAGTCTTCTCTACCATTACGAACAAGTCCACTTCTTTAAGGCTCGGGGTCCTCTGTACACCCCTTCTGCAGATGTATTTTCTGTCAGCAATCAGTCATGGAGACCCGAATTAGCTATTGTGGAATACTCACCCCAGCGGATAAACGAGTGCCCTGAATCCCATAATGAAGATGAATCGTGGGGCGAAGTGAATGGAATGATAGAGGGGAAATTCGACTGTGGGTATTTGGTGTCAGTGAAGGTAGGGACAGAGATTCTGAGAGGGGTGCTATACCATCCCCAGCAATTGGGCGGGAATGCGATGGTGGCCTACAGCGGAAGCGGTGGACGCGTGGGTAGGAGGAGGAGGAACAGAAGGAGGTGGGACCCAAACTACCCAAAGCCCAACAGGAGCGGCTACAACTTCTTTTTCGCAGAGAAGCATTACAAGCTCAAAGCGCTGTATCCAAACAGGGAGAGGGAATTCACCAAGATGATCGGCCAGTCATGGAGCAGTCTCAGCCCCGAGGAGAGAATGGTCTACCAGAACATTGGGTTGAGGGACAAGGAACGGTACAAGAGAGAATTGCGGGAGTACAAGGAGAAAATGTCAACGAAGCTCCCTCCCACCGTGGAACAGCTTTCCACTGTTTAA	960	0.5208	MSPAENSRGLSAEEGRHYPAPLAAHEDVSKDPTLFRDTLRRFHFLMGTKFMIPVIGGKELDLHVLYVEVTRRSGYEKVVAEKKWREVGNVFRFSPTTTSASFVLRKHYMSLLYHYEQVHFFKARGPLYTPSADVFSVSNQSWRPELAIVEYSPQRINECPESHNEDESWGEVNGMIEGKFDCGYLVSVKVGTEILRGVLYHPQQLGGNAMVAYSGSGGRVGRRRRNRRRWDPNYPKPNRSGYNFFFAEKHYKLKALYPNREREFTKMIGQSWSSLSPEERMVYQNIGLRDKERYKRELREYKEKMSTKLPPTVEQLSTV	319

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco05g3007	319	SUPERFAMILY	ARID-like	25	128	IPR036431	GO:0003677
	Acco05g3007	319	CDD	ARID_HMGB9-like	31	116	IPR045303	GO:0003677
	Acco05g3007	319	SMART	hmgende2	234	303	IPR009071	-
	Acco05g3007	319	PANTHER	HIGH MOBILITY GROUP B PROTEIN 9	12	307	-	-
	Acco05g3007	319	Pfam	ARID/BRIGHT DNA binding domain	35	116	IPR001606	GO:0003677
	Acco05g3007	319	ProSiteProfiles	ARID domain profile.	29	120	IPR001606	GO:0003677
	Acco05g3007	319	SMART	ARID_2	26	116	-	-
	Acco05g3007	319	SMART	bright_3	30	121	IPR001606	GO:0003677
	Acco05g3007	319	CDD	HMG-box_AtHMGB9-like	235	301	-	-
	Acco05g3007	319	ProSiteProfiles	HMG boxes A and B DNA-binding domains profile.	235	302	IPR009071	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco05g3007	Acco-ChrAcco05	44593812	44595606	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco05g3007	16	305	ARID Transcription Factor Family	AT1G76110	65.574	8.61e-131	374

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	ARID	Acco05g3007		ARID	4e-17	CL0123

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