Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g3007 ATGTCGCCGGCGGAGAACAGCAGGGGATTGAGTGCGGAGGAAGGCAGGCATTACCCTGCCCCACTCGCGGCGCACGAGGACGTGTCCAAGGACCCCACCTTATTCAGGGACACTCTCAGGCGTTTCCACTTCCTCATGGGTACCAAGTTCATGATTCCTGTGATTGGAGGGAAGGAACTGGATTTGCACGTTCTTTACGTGGAGGTTACGAGGAGGAGCGGTTATGAGAAGGTTGTGGCAGAGAAGAAATGGAGGGAAGTGGGGAATGTGTTCAGGTTCTCTCCCACTACAACCAGCGCTTCTTTCGTACTGAGGAAGCACTACATGAGTCTTCTCTACCATTACGAACAAGTCCACTTCTTTAAGGCTCGGGGTCCTCTGTACACCCCTTCTGCAGATGTATTTTCTGTCAGCAATCAGTCATGGAGACCCGAATTAGCTATTGTGGAATACTCACCCCAGCGGATAAACGAGTGCCCTGAATCCCATAATGAAGATGAATCGTGGGGCGAAGTGAATGGAATGATAGAGGGGAAATTCGACTGTGGGTATTTGGTGTCAGTGAAGGTAGGGACAGAGATTCTGAGAGGGGTGCTATACCATCCCCAGCAATTGGGCGGGAATGCGATGGTGGCCTACAGCGGAAGCGGTGGACGCGTGGGTAGGAGGAGGAGGAACAGAAGGAGGTGGGACCCAAACTACCCAAAGCCCAACAGGAGCGGCTACAACTTCTTTTTCGCAGAGAAGCATTACAAGCTCAAAGCGCTGTATCCAAACAGGGAGAGGGAATTCACCAAGATGATCGGCCAGTCATGGAGCAGTCTCAGCCCCGAGGAGAGAATGGTCTACCAGAACATTGGGTTGAGGGACAAGGAACGGTACAAGAGAGAATTGCGGGAGTACAAGGAGAAAATGTCAACGAAGCTCCCTCCCACCGTGGAACAGCTTTCCACTGTTTAA 960 0.5208 MSPAENSRGLSAEEGRHYPAPLAAHEDVSKDPTLFRDTLRRFHFLMGTKFMIPVIGGKELDLHVLYVEVTRRSGYEKVVAEKKWREVGNVFRFSPTTTSASFVLRKHYMSLLYHYEQVHFFKARGPLYTPSADVFSVSNQSWRPELAIVEYSPQRINECPESHNEDESWGEVNGMIEGKFDCGYLVSVKVGTEILRGVLYHPQQLGGNAMVAYSGSGGRVGRRRRNRRRWDPNYPKPNRSGYNFFFAEKHYKLKALYPNREREFTKMIGQSWSSLSPEERMVYQNIGLRDKERYKRELREYKEKMSTKLPPTVEQLSTV 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g3007 319 SUPERFAMILY ARID-like 25 128 IPR036431 GO:0003677
Acco05g3007 319 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677
Acco05g3007 319 SMART hmgende2 234 303 IPR009071 -
Acco05g3007 319 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 12 307 - -
Acco05g3007 319 Pfam ARID/BRIGHT DNA binding domain 35 116 IPR001606 GO:0003677
Acco05g3007 319 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677
Acco05g3007 319 SMART ARID_2 26 116 - -
Acco05g3007 319 SMART bright_3 30 121 IPR001606 GO:0003677
Acco05g3007 319 CDD HMG-box_AtHMGB9-like 235 301 - -
Acco05g3007 319 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 235 302 IPR009071 -
Acco05g3007 319 Pfam HMG (high mobility group) box 235 302 IPR009071 -
Acco05g3007 319 Gene3D High mobility group box domain 220 310 IPR036910 -
Acco05g3007 319 Gene3D - 22 125 IPR036431 GO:0003677
Acco05g3007 319 SUPERFAMILY HMG-box 232 306 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g3007 Acco-ChrAcco05 44593812 44595606 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g3007 16 305 ARID Transcription Factor Family AT1G76110 65.574 8.61e-131 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Acco05g3007 ARID 4e-17 CL0123