Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g2947 ATGAAGATCCTGTGCGACGTCTGTAATAACCATGACGCTTCCCTATTCTGCACTGCCGACGAAGCCGCCCTATGCGATGCCTGCGATCACCGGGTCCACCACGCCAACAAGCTTGCCTCCAAGCACCACCGCTTCTCTCTTCACCGCCCTTCTCCCAACCAATTCCCTCTCTGCGATATTTGCCTGGAGAGAAGAGCGTTTTTGTTCTGTCAACAGGACAGAGCAATTCTATGCAAAGATTGTGACACGCCGATTCACTCGGCCAACGAGCACACCCGGAAGCACAATAGGTTTCTTCTGACGGGGATTAAGTTCTCCGATGCTGCCACGCCTTACTCACCATCAGCCTCCAATCCCGTTTTGACGAATGGTTCTGATTCCATGTCTTATTCCAAGTCGCAGAATTCAGCTAAGAACTCCGTTTCCGCTTCTTCTGCCATCTCACACCCCCCTTCAATGGACAAAACTTCAGCTTCAACAGTATCAACACCTGCCACAATTAACAAGGCTGTGGGAAACTTGTCAACGAACGAAGGGACTGTTTCCACAAGTAGTATATCTGAGTATTTGATAGAGACTCTCCCGGGATGGCAGGTCGACGAATTTCTCGACTCGTCTGCTGTTCCGTTTGGTTTCAGTAATAAGAGTCATGATACGTTGGCTGTGTTAGATGCTGATATTGAGGGAAACATTGGTTCTTTCTCTACCGAGAGTATGGGGATCTGGGTTCCTCAGGCACCCACTCCTCTGTTTACCCAACAAGTGGATCGGCAGATCAAGTTCCAAGAGACAAAAGACACGACCAATACTGAGGCCAGCAGATCAAGGTCGAGGGATGATAACTTCATAGTTCCACAAATCAACTCTCCTATTGGGTCCAAGAGATCCAGACTCCTTTGGTAG 903 0.4906 MKILCDVCNNHDASLFCTADEAALCDACDHRVHHANKLASKHHRFSLHRPSPNQFPLCDICLERRAFLFCQQDRAILCKDCDTPIHSANEHTRKHNRFLLTGIKFSDAATPYSPSASNPVLTNGSDSMSYSKSQNSAKNSVSASSAISHPPSMDKTSASTVSTPATINKAVGNLSTNEGTVSTSSISEYLIETLPGWQVDEFLDSSAVPFGFSNKSHDTLAVLDADIEGNIGSFSTESMGIWVPQAPTPLFTQQVDRQIKFQETKDTTNTEASRSRSRDDNFIVPQINSPIGSKRSRLLW 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g2947 300 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Acco05g2947 300 FunFam B-box zinc finger protein 21 1 98 - -
Acco05g2947 300 Gene3D Classic Zinc Finger 1 99 - -
Acco05g2947 300 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 289 - -
Acco05g2947 300 SMART bboxneu5 4 47 IPR000315 GO:0008270
Acco05g2947 300 SMART bboxneu5 53 100 IPR000315 GO:0008270
Acco05g2947 300 MobiDBLite consensus disorder prediction 112 161 - -
Acco05g2947 300 CDD Bbox1_BBX-like 57 100 - -
Acco05g2947 300 MobiDBLite consensus disorder prediction 263 278 - -
Acco05g2947 300 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270
Acco05g2947 300 Pfam B-box zinc finger 55 93 IPR000315 GO:0008270
Acco05g2947 300 CDD Bbox1_BBX-like 4 47 - -
Acco05g2947 300 MobiDBLite consensus disorder prediction 263 288 - -
Acco05g2947 300 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g2947 Acco-ChrAcco05 44146665 44147810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g2947 1 300 C2C2-CO-like Transcription Factor Family AT1G75540 42.000 1.10e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Acco05g2947 zf-B_box 2.8e-06 No_clan