Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g2911 ATGCCTTTCAAAGATTTTGTTCGCGAGCTCAGGGATATTCGAGATGGCTTGGGCAATATTTCTATAAGAGGAGGGGTTGAAGTAAATCGCATTCCTTCCCGTGGAAAATCTCTTATTGCACCCGAATGCTCCTCACCACCTTCGTTAGTGACTCAGCAGAGCCCCTGGGCTAACCTACCATCCGAGTTGTTATTAGACATAATTCAGAGGGTGGAAGCAAGCGAAACTTCCTGGCCTGCCCGGCGGGCGGTTGTAGCTTGTGCCTCAGTTTGTAGGTCATGGAGGAAAATAACGGACGAGGTGGTAAAGACCCCAGAACAGTGTGGTTGGCTTACTTTCCCCATATCGCTGAAGCAGCCTGGTCCAAGAGAGACTCCCATCCAGTGTTTTATAAAGAGAGAAAGGTGGACTTCAAAATATCTTTTATATCTTGGTCTAAGTCCAGCTCTCTCTGGGGATATGAGTAAACTGCTACTGGCAGCAAAGAAGATTAGACGGGCAACATGTACAGAGTTCATAATATCCTTGGTTGCAGATGATTTTTCTAAAGCAAGCCATACATATGTTGGAAAGCTGAGGTCTAATTTTCTAGGTACCAAATTCACGATCTTGGATAGTGAACTGCTTGATTCTTCCCTTCCGTTGAATAGTAAATTGCAGCAGAAAATCCATTCAAAGCAGAGGCAGGTTCTTCCAAGGACTGCTGTAGCAAAGCATAATGTGGCCACGATATCGTATGAGCTCAATGTTCTCCGCACTAGAGGTCCAAGGAGAATGCGGTGTACCATGCATTCAATTCCAGTGTCTGCAATCCAAGAAGGCGGCACTGCTCCTACTCATTTGAAGTCTACTAGATGCTCTGGTGAGAATCTATCTTCCACGTCCATTTCAAAAGAAAGAAAGCCAGGAGTTGACTATGGCTCCAACAGTGACGATAAGCCCCCAGTATCAAGCCAAATCACAAGGGAGCCTCTGATTTTGAAAAACAAAGCTCCTAGATGGCATGAGCAACTGCAATGTTGGTGTTTGAATTTCAAGGGACGTGTTACAGTGGCCTCAGTAAAGAACTTCCAGCTCGTAGCTGCTGCAGAAGCTCAACAAAATGTTTCAGCGGCAGAGCAGGATAGAGTAATACTACAGTTTGGGAAGATTGGAAAGGACATATTCACCATGGATTACCGTTACCCCCTCTCTGCATTTCAAGCCTTTGCAATCTGCTTGAGCAGCTTTGACACCAAACCTGCTTGCGAGGGAGGGGGGTATAACTCTTACGCCAATGAATGTTTTCGCCTGTTGTTGCAAGTTTGTGTTATCTTGCTGTCAGGCTTGGTATTTAATTGGCAGGTTAACTAA 1353 0.4538 MPFKDFVRELRDIRDGLGNISIRGGVEVNRIPSRGKSLIAPECSSPPSLVTQQSPWANLPSELLLDIIQRVEASETSWPARRAVVACASVCRSWRKITDEVVKTPEQCGWLTFPISLKQPGPRETPIQCFIKRERWTSKYLLYLGLSPALSGDMSKLLLAAKKIRRATCTEFIISLVADDFSKASHTYVGKLRSNFLGTKFTILDSELLDSSLPLNSKLQQKIHSKQRQVLPRTAVAKHNVATISYELNVLRTRGPRRMRCTMHSIPVSAIQEGGTAPTHLKSTRCSGENLSSTSISKERKPGVDYGSNSDDKPPVSSQITREPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEAQQNVSAAEQDRVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACEGGGYNSYANECFRLLLQVCVILLSGLVFNWQVN 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g2911 450 PRINTS Tubby superfamily signature 188 212 IPR000007 -
Acco05g2911 450 PRINTS Tubby superfamily signature 172 188 IPR000007 -
Acco05g2911 450 PRINTS Tubby superfamily signature 238 265 IPR000007 -
Acco05g2911 450 PRINTS Tubby superfamily signature 345 361 IPR000007 -
Acco05g2911 450 PRINTS Tubby superfamily signature 395 417 IPR000007 -
Acco05g2911 450 PRINTS Tubby superfamily signature 374 393 IPR000007 -
Acco05g2911 450 PRINTS Tubby superfamily signature 327 344 IPR000007 -
Acco05g2911 450 MobiDBLite consensus disorder prediction 273 318 - -
Acco05g2911 450 SUPERFAMILY F-box domain 52 126 IPR036047 GO:0005515
Acco05g2911 450 ProSitePatterns Tub family signature 1. 345 358 IPR018066 -
Acco05g2911 450 Gene3D - 50 103 - -
Acco05g2911 450 Pfam F-box domain 56 102 IPR001810 GO:0005515
Acco05g2911 450 ProSitePatterns Tub family signature 2. 402 417 IPR018066 -
Acco05g2911 450 SUPERFAMILY Tubby C-terminal domain-like 105 417 IPR025659 -
Acco05g2911 450 Gene3D Tubby Protein; Chain A 114 417 IPR025659 -
Acco05g2911 450 MobiDBLite consensus disorder prediction 276 299 - -
Acco05g2911 450 CDD F-box_AtTLP-like 56 100 - -
Acco05g2911 450 Pfam Tub family 117 412 IPR000007 -
Acco05g2911 450 PANTHER TUBBY-RELATED 50 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g2911 Acco-ChrAcco05 43840678 43842753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g2911 1 418 TUB Transcription Factor Family AT2G18280 57.416 2.62e-164 467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Acco05g2911 Tub 7.8e-102 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g2911 05 43840678 43842753 Acco05g2911 05 43840678 43842753 ECH