Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g2902 ATGGGGCGTAGGCAAGCCAGGACGACAGCTCACTCGTGCTCGACATTCGATACCGCTCCTTCACTCGTCCGTGAGTCCGTCTGTCGCACTCGGTCTCGCCGTCGCTCAAGTCCTGGCTCCGACTCCTCCGAGCGTCCGACCATTGGCTCACCTCATTGGACTGCCTCGCTCCCTCTTTGCCTTTACTCTTCTAGGCCAGGGCTTCTTGACTTCTTCACAATCTCTCAGCGACTCAGCTCACTGAAATCGGATTGTCTCTCATCTCTCGTCCATCTCGTAGTCCACCGTCCTCTGAAGTGGTTGGTTACGGGATGCTCAGGTTTTCAGAATTTCAGGGAATTGATTCGAGCATCACCATTCGAGGTTGGAGCAACGCTGTGGCGGGAAGAGGATATCGATCTTAGCCGTCGGTGCCTCGTGCCGCCATTAGTTCAGTTTCCTGCCAAGATGGCTGAGGTGCTAGATAATGACACTCTTGCAAGTGACAAGCCTATCACTGAAAAGGACATTTCTGACGAGTTAGATATGAAAATAAAGAAGTACCTGAGAGGAGAAGGTGCAAATTTGGAGGTCTTGACAGACAAAAAACTGAAGGGTCAACTTTATGCTAGAGAAGAGTTATATAGTAAATCTGCTAAAGTTGCTACCAAGGCAGATAAGTGGCTTGTGCCCAGTGAGGGAGGTTATCTAGAGGCTGAAGGCATAGAGAAGACATGGAGGATCAAACAAGAGGCTATAGCTAAAGAAGTAGATATCTTAAGCTCAAGAAACCAATATGATATTGTTTTACCAGAACTTGGTCCGTACACTTTGCAATTTACTTCAAGCGGCCGTTATATGGCTCTTGGAGGGCGTAAGGGCCATTTGGGAATTGTGGACTTGATGAATATGAGCCTAATCAAAGAGTTTCAGGTAAGAGAAACCATCCGTGATGTGACATTCTTGCATAATGAGCTGTTTTTTGCTGCTGCGCAGAAAAAGTATACTTACATCTATGACCGTCATGGCACTGAGCTTCACTGCCTCAAGGAACATGGTCCTGTGTCAAGGCTTCAGTTTCTAAAAAATCACTTCCTTCTGGCTTCAATAAACAAGTTCGGGCAGCTTCATTATCAGGATGTTACGACAGGTGCAATGGTTGGTAATTTTCGAACTGGTTTAGGTCGTACTGATGTGATGCAAGTGAACCCCTTCAATGGGGTTGTTGCTCTGGGTCATTCAGGTGGTACGGTCACAATGTGGAAGCCTACTAGCTCAGCTCCTCTTGTCAAGATGTTGTGTCATCATGGTCCTGTCTCAGCTCTGGCATTTCACTCAAATGGTCACTTAATGGCCACAGCTGGGAAGGACAAAAAAATAAAGCTTTGGGACTTGAGAAAATATGAGGTTTTCCAGACACTACATGGCCACGCCAACACGTTGGATTTTAGTCAAAAAGGACTACTTGCATATGGTACTGGATCTTCTATACAGGTTCTGGGTGATCTTTCTGGTTCGCAGAATTATTCGAGATATATGACTCATTCCATGGTTAAAGGTTACCAAATATCGAAGTTAATGTTTCGACCATATGAAGATGTTCTCGGCATAGGGCATTCCATGGGTTGGTCCAGCATTCTTATTCCAGGATCGGGAGAACCTAACTTTGATACATGGGTGGCTAATCCATTTGAAACATCTAAACAGAGGAGAGAGAAAGAAGTTCGCTCACTGCTGGATAAGCTGCCGCCTGAGACGATCATGTTGGACCCAAGCAAAATCGGTACAGTAAAGCCTGCACAGAAGGAGAAGAAGTCAAAGAAGGAGAGGGAGGCAGATATAGATGCTGCCGTTGAAGCTGCCAAGGACATCAAAATGAAGAAGAAAACTAAAGGAAGAAGTAAACCAAGCAAGAAGATGAAGAAAAAGAAGGAGGCAGTTGAGAGAGTGAAGAGGCCTTTCTTGGAAGAAAAAATGGAGGAAGCAATTTCGAGGAAGAAACAAAAAATCAGCGAGGAAGTCAGTTTACCAAAATCTTTAAAGAGGTTTGCTGGTAAAAAGCTAGCTACATAA 2052 0.4527 MGRRQARTTAHSCSTFDTAPSLVRESVCRTRSRRRSSPGSDSSERPTIGSPHWTASLPLCLYSSRPGLLDFFTISQRLSSLKSDCLSSLVHLVVHRPLKWLVTGCSGFQNFRELIRASPFEVGATLWREEDIDLSRRCLVPPLVQFPAKMAEVLDNDTLASDKPITEKDISDELDMKIKKYLRGEGANLEVLTDKKLKGQLYAREELYSKSAKVATKADKWLVPSEGGYLEAEGIEKTWRIKQEAIAKEVDILSSRNQYDIVLPELGPYTLQFTSSGRYMALGGRKGHLGIVDLMNMSLIKEFQVRETIRDVTFLHNELFFAAAQKKYTYIYDRHGTELHCLKEHGPVSRLQFLKNHFLLASINKFGQLHYQDVTTGAMVGNFRTGLGRTDVMQVNPFNGVVALGHSGGTVTMWKPTSSAPLVKMLCHHGPVSALAFHSNGHLMATAGKDKKIKLWDLRKYEVFQTLHGHANTLDFSQKGLLAYGTGSSIQVLGDLSGSQNYSRYMTHSMVKGYQISKLMFRPYEDVLGIGHSMGWSSILIPGSGEPNFDTWVANPFETSKQRREKEVRSLLDKLPPETIMLDPSKIGTVKPAQKEKKSKKEREADIDAAVEAAKDIKMKKKTKGRSKPSKKMKKKKEAVERVKRPFLEEKMEEAISRKKQKISEEVSLPKSLKRFAGKKLAT 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g2902 683 Gene3D - 391 508 IPR015943 GO:0005515
Acco05g2902 683 SMART BING4CT_2 504 584 IPR012952 -
Acco05g2902 683 Pfam BING4CT (NUC141) domain 505 583 IPR012952 -
Acco05g2902 683 ProSiteProfiles Trp-Asp (WD) repeats profile. 425 466 IPR001680 GO:0005515
Acco05g2902 683 Gene3D - 251 390 IPR015943 GO:0005515
Acco05g2902 683 Pfam WD domain, G-beta repeat 426 457 IPR001680 GO:0005515
Acco05g2902 683 MobiDBLite consensus disorder prediction 27 49 - -
Acco05g2902 683 SUPERFAMILY WD40 repeat-like 265 532 IPR036322 GO:0005515
Acco05g2902 683 ProSitePatterns Trp-Asp (WD) repeats signature. 444 458 IPR019775 -
Acco05g2902 683 PANTHER WD-REPEAT PROTEIN BING4 158 677 IPR040315 -
Acco05g2902 683 MobiDBLite consensus disorder prediction 611 643 - -
Acco05g2902 683 FunFam Os01g0183100 protein 334 528 - -
Acco05g2902 683 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 425 459 - -
Acco05g2902 683 SMART WD40_4 460 494 IPR001680 GO:0005515
Acco05g2902 683 SMART WD40_4 296 333 IPR001680 GO:0005515
Acco05g2902 683 SMART WD40_4 254 293 IPR001680 GO:0005515
Acco05g2902 683 SMART WD40_4 376 415 IPR001680 GO:0005515
Acco05g2902 683 SMART WD40_4 418 457 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g2902 Acco-ChrAcco05 43789872 43798622 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g2902 330 499 U-box Gene Family AT2G33340 27.660 1.49e-11 65.5