Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g2856 ATGGCAAGCAGTTTTGGGGAATCAACGAGCAGATCACTTCCAAGCCCTTCCTATTCCAGCAACAATAGTAACAGCGATGCTGGCAATTTTGAATGCAACATATGCTTTGAATTAGCACAAGACCCTATTATTACTTTATGTGGGCATCTTTTCTGTTGGCCTTGCCTTTACAGATGGCTTCACTTTCACTCACAGTCTCGAGAATGCCCAGTGTGTAAGGCTCTCATTGAGGAGGAGAAATTGGTTCCCTTATATGGGAGGGGTAAGTCCTCATCTGATCCAAGGTCGAGGTCTGTTCCTGGCATGAACATACCACATCGTCCATCAGGTCAGCGGCCTGAAACTGCCCCACCGCCTGAATCAAACCACTTTCCTCAACATGGCTTTGGATTCATGGGTGGGTTGGGAGGCTTTGCTCCTATGCCAACCCCAAGATTTCATAATTTTACAATGTTCCCAGGATTTACTGATTTTATTCCATTGCTTTTTAACTCTCAACTGCCTGGATTTCATGATGGAGCTATGCATGGTAATCCAACTAGTTTTCACCATGGATTTCCTAATTCATTTCATGGTGGCCATGCTCATGGGTATTATCCTCGTCATCCAGGTCAAGGGCAACAAGATTATCATCTAAAGAGGATTTTTGTGCTTGTTGTTTTTTGTGTTTTTCTTGCTCTTATTTGGCAATAG 693 0.4358 MASSFGESTSRSLPSPSYSSNNSNSDAGNFECNICFELAQDPIITLCGHLFCWPCLYRWLHFHSQSRECPVCKALIEEEKLVPLYGRGKSSSDPRSRSVPGMNIPHRPSGQRPETAPPPESNHFPQHGFGFMGGLGGFAPMPTPRFHNFTMFPGFTDFIPLLFNSQLPGFHDGAMHGNPTSFHHGFPNSFHGGHAHGYYPRHPGQGQQDYHLKRIFVLVVFCVFLALIWQ 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g2856 230 ProSiteProfiles Zinc finger RING-type profile. 32 73 IPR001841 -
Acco05g2856 230 Pfam Zinc finger, C3HC4 type (RING finger) 32 72 IPR018957 GO:0046872
Acco05g2856 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 86 IPR013083 -
Acco05g2856 230 MobiDBLite consensus disorder prediction 1 20 - -
Acco05g2856 230 SMART ring_2 32 72 IPR001841 -
Acco05g2856 230 CDD RING-HC_AtRMA-like 30 74 - -
Acco05g2856 230 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 16 86 - -
Acco05g2856 230 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Acco05g2856 230 SUPERFAMILY RING/U-box 29 85 - -
Acco05g2856 230 MobiDBLite consensus disorder prediction 86 122 - -
Acco05g2856 230 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 18 226 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g2856 Acco-ChrAcco05 43531184 43531876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g2856 12 213 C3H Transcription Factor Family AT1G19310 60.386 4.49e-78 233