Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g2832 ATGGGAGAAAATTGTCAAAGCTGTAGATCATGGGTGGACGACATTTACTGGTCCCGTTTCCAATTTGTCCATTTTGCCCACTTTCTTCCCAAGGGATTTGATAGACAGCTTGCACTGCCCAAAAGTTTTTCAGATAATTTGAGGAAGAAATTGCCAGATAATGTGATTCTGAAAGGTCCTGGTGGCGATGTGTGGGGTGTTGGATTGACAACCAGAAATGATACCTTGCACTTCACGCAGGGCTGGCAACAATTTGTTAAAGATCACTGTTTGGAAGAGAATGATCTGCTGGTCTTCAAGTACAATAACGAATCACAGTTTGAAGTTCTAATATTTGGCCAGGGGAGTTCCTGTGAGAAGGCTGCTTCTTATTTTGTGAGGAAATGTGGGCATACAAATAAGAGAATCAGATATAAGCGTTTGGAAGAAGTCAATTTCCCTTCTAATATTCGTGCTGAACATGCTTCACCTGAGAAGATTGTGCGTGGGGAGAGCGTTGGAGTGCCAGCCATCGTCCCCACTGAAATCAGTAGTAAAGAGGCATGCGATGCTGATGTGGAATTTGCCTCCCCTGTGACAACAATTCCAATGGCCGCAACAGATGTCCAAAGTAAGCGGAGAGGAGGAACCAGAGGGTCTAAGACATATGGGGGTACAGCTGACTTGATTGCCGATGCTGAACCCATATCTGCGAGCAGAAGTAAGGCGAATGAAACATTATATATTTCAAACAGAAGGCCTATCACAGAGGATGAGAAGACGATGGTCCTCCAATTAGCTCAGGCAGCGTGTACTGACAATGGCTTCTACATCATCATGCGTCCCACACATGTTTACAAGAGATTCTATGCGTCAATCCCTAGCAAGTGGTTAGCGGAACATCTTTCTCCTTACTCTGAAGATGTGATATTGCGAATGGGAGGGAATGAATGGCGTGCCAAATACAGCTTTGAACATAGTCGTCGAACTGGAGGACTGACTGGTGGGTGGAAACAGTTCGCTGTAGACAATAACCTTGAAGAGTTTGATGTTTGCGTGTTTGAACTAGTAGGTCAAAGCCAGCCATTGATCATGGATGTGACGATATTCAGAGTTGTTGAGGAGGTCACTCCTCTGGGTAAAGTGAATCCTGTTGGAGGAAAACGAGGTCCAAATGGCATCCTATCATGGGAAGCCAGTCCTTAA 1185 0.4498 MGENCQSCRSWVDDIYWSRFQFVHFAHFLPKGFDRQLALPKSFSDNLRKKLPDNVILKGPGGDVWGVGLTTRNDTLHFTQGWQQFVKDHCLEENDLLVFKYNNESQFEVLIFGQGSSCEKAASYFVRKCGHTNKRIRYKRLEEVNFPSNIRAEHASPEKIVRGESVGVPAIVPTEISSKEACDADVEFASPVTTIPMAATDVQSKRRGGTRGSKTYGGTADLIADAEPISASRSKANETLYISNRRPITEDEKTMVLQLAQAACTDNGFYIIMRPTHVYKRFYASIPSKWLAEHLSPYSEDVILRMGGNEWRAKYSFEHSRRTGGLTGGWKQFAVDNNLEEFDVCVFELVGQSQPLIMDVTIFRVVEEVTPLGKVNPVGGKRGPNGILSWEASP 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g2832 394 Gene3D - 19 118 IPR015300 -
Acco05g2832 394 SUPERFAMILY DNA-binding pseudobarrel domain 21 113 IPR015300 -
Acco05g2832 394 SMART B3_2 269 366 IPR003340 GO:0003677
Acco05g2832 394 SMART B3_2 25 115 IPR003340 GO:0003677
Acco05g2832 394 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 31 368 IPR044837 -
Acco05g2832 394 CDD B3_DNA 269 364 IPR003340 GO:0003677
Acco05g2832 394 Gene3D - 247 369 IPR015300 -
Acco05g2832 394 ProSiteProfiles B3 DNA-binding domain profile. 269 366 IPR003340 GO:0003677
Acco05g2832 394 ProSiteProfiles B3 DNA-binding domain profile. 22 115 IPR003340 GO:0003677
Acco05g2832 394 Pfam B3 DNA binding domain 34 112 IPR003340 GO:0003677
Acco05g2832 394 Pfam B3 DNA binding domain 269 363 IPR003340 GO:0003677
Acco05g2832 394 CDD B3_DNA 32 112 IPR003340 GO:0003677
Acco05g2832 394 SUPERFAMILY DNA-binding pseudobarrel domain 269 357 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g2832 Acco-ChrAcco05 43382378 43384905 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g2832 1 378 REM Transcription Factor Family AT4G33280 32.494 2.24e-68 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Acco05g2832 B3 4.9e-14 CL0405