Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g2792 ATGTCGAGGACGCTGGTGCAGCCGATAGGGCAGAAGAGGTTGACCAACGTAGCGGTGGTGCGTCTGAAGAAGCGTGGAAATCGCTTTGAGATCGCCTGCTATCCAAACACTGTCCTCTCTTGGCGTTCTGGCGTGGAGAAAGATTTGGATGAAGTATTGCAGTCGCATACTGTTTATTCAAATGTTTCAAAAGGAGTTTTAGCAAAGTCAAAGGATTTGGTTGCCGCCTTTGGGACTGATGATCAGACAAAGATATGTTTGGAGATTTTACAGAAAGGAGAACTTCAGGTTGCTGGGAAAGAGAGGGAATCTATTCTTTCAAATCAGTTCAGGGATATTGCAACCATTGTTATGCAAAAGACATACAATCCTGAAACTCAACGTCCTTACACAATCAATATGATTGAAAGACTGATGCACGAAATACATTTTGCTGTTGACCCAAACAGCAGTTCAAAGAAACAGGCTCTGGAAGTTATTCAAGAGCTTCAAAAGCACTTCCCAATCAAACGGTGTCCACTAAGAATTCGAGTTGCTCCTCCAGAGGAGAAAGTGCATTTACTGCTAGATAAGCTGAATGCTTGGAAGGCCAGCATCATTTTAAAAGAAGCATCCGCTAGTCAGTTGTCTGTTGTATTTGAACTGGAACCTAGCCTATATAAAGAGTGCCATGACTTTGTTATGAACAACGTATATGGAAGATTTGAAGTTCTTTCACACTCCCTTTATGTGGATGGTGATACCCATGTGGATCAATACAATGAACACGAGGATCTGCCTGCTCCGTTGCCCAGTGACACTCGTGATCCTGTGCTCGAACTGAATGAAAAACTTCAGAAGCAAACAATTTCTACCAAGAGCGGACCTAGTGAGGGACAACAAAAGCAAAACAAGTGCAACACATGCCATGCTTCTTTTGAAAATCCTATGCTGTATAGGGAACACCATAAGAGCGAGTGGCACAAACACAATATGAAGCGCAAAACCAGGCAACTCCCTCCCCTTAGTGAGGAAGATTGCATGGCAGACATGGATCTGAACGACTCAAAATCTGATTTGAAGGATTATTCTTTTTGA 1077 0.429 MSRTLVQPIGQKRLTNVAVVRLKKRGNRFEIACYPNTVLSWRSGVEKDLDEVLQSHTVYSNVSKGVLAKSKDLVAAFGTDDQTKICLEILQKGELQVAGKERESILSNQFRDIATIVMQKTYNPETQRPYTINMIERLMHEIHFAVDPNSSSKKQALEVIQELQKHFPIKRCPLRIRVAPPEEKVHLLLDKLNAWKASIILKEASASQLSVVFELEPSLYKECHDFVMNNVYGRFEVLSHSLYVDGDTHVDQYNEHEDLPAPLPSDTRDPVLELNEKLQKQTISTKSGPSEGQQKQNKCNTCHASFENPMLYREHHKSEWHKHNMKRKTRQLPPLSEEDCMADMDLNDSKSDLKDYSF 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g2792 358 ProSitePatterns Zinc finger C2H2 type domain signature. 299 321 IPR013087 -
Acco05g2792 358 NCBIfam ribosome assembly factor SBDS 13 226 IPR002140 GO:0042256
Acco05g2792 358 FunFam SBDS, ribosome maturation factor 3 96 - -
Acco05g2792 358 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Acco05g2792 358 Gene3D - 1 96 IPR036786 -
Acco05g2792 358 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 242 IPR039100 -
Acco05g2792 358 FunFam SBDS, ribosome maturation factor 100 172 - -
Acco05g2792 358 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254
Acco05g2792 358 Gene3D - 174 251 - -
Acco05g2792 358 MobiDBLite consensus disorder prediction 317 358 - -
Acco05g2792 358 SUPERFAMILY beta-beta-alpha zinc fingers 286 345 IPR036236 -
Acco05g2792 358 Gene3D - 100 172 IPR037188 -
Acco05g2792 358 MobiDBLite consensus disorder prediction 343 358 - -
Acco05g2792 358 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Acco05g2792 358 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
Acco05g2792 358 SUPERFAMILY FYSH domain 13 96 IPR036786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g2792 Acco-ChrAcco05 43075901 43078555 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g2792 28 358 C2H2 Transcription Factor Family AT1G43860 58.721 1.06e-141 403