Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g2789 ATGAATGCGCATTTCTCCCAGAAACGCTCGTCACAGATCGGTGTTAATAGGCTCGAGCACAGCACAAGGCAATTATGGAAAAGGGAATTGGGAATTATAGGTGGTGAGGCAAAAGTCAGTTCCTCAATTCTTCTTTCTGTGGACTTGAAAGCCATGCAAATTGGAGGCCTCCACATAGAATACCCAACACTTTCTGCCATGGAAGATTCTAATTTTGTGGCAACTGCTTCATCAGCCGGCGATCAGGACTCCAAGACTTGTCCTCGCGGTCACTGGCGGCCAGCCGAGGATGAAAAACTCCGGCAACTTGTCGAACAGTATGGTGCCCAGAACTGGAATTCAATTGCTGAGAAGCTCCAAGGAAGATCAGGGAAAAGTTGCAGATTAAGGTGGTTTAATCAGCTTGATCCGAGGATTAACAGGAGACCATTTACAGAAGAAGAGGAAGAAAGGTTACTGGCGGCTCATCACATTCATGGGAACAAGTGGGCACTCATAGCGAGGCTTTTTCCTGGTCGAACAGATAACGCTGTGAAGAATCACTGGCATGTTATTATGGCGCGAAAGCAAAGAGAGCAATCCAAGCAGTTAAGTGGCAAGAGAGTCTTCCAAGATGGTTACAACAATGATTCTTCCAGTAACACTTCCTCTTCTTATAAAAGATCAAAATCTCAGGATATCTTCAGTTCCCAAACGTTCTTTGACTTCAGGAACATCGATAATAAAAGTAGAATCATCGCAGAATATTCTCCCTCCATCTCCTTGGCATCTTGGAATTTCGCATCCATGGCGAAACAAGGAAAAGACAGTACTACCAATTACATCAACCCCTGCTTTAACATTTACTTCTCAGAATGTTCAAAAGGTTTGGACAGATATCTTTACAGAATTTATCCAAATTCTGCATCATCGTACGGCAGCATTCTGCCAAACTACAGGAAGCTTAATAATGTTCCAGCTGTTCCTCACGGATCATCAGTCATAGGTTGCGGTGGTGGTGGTGGTGATGATAGGAATAGGACAATAAATAAGGACTTGACGAATCCATGCGACATCTCACCCACATTTGCAAAGAAGAGGGCTTCCACGGAGCAAGAGCAAGCAGACAATCACAGAGAAGTTTCCTTCATTGATTTTTTGGGCGTGGGTGTATCATCGTCATGA 1164 0.4416 MNAHFSQKRSSQIGVNRLEHSTRQLWKRELGIIGGEAKVSSSILLSVDLKAMQIGGLHIEYPTLSAMEDSNFVATASSAGDQDSKTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHHIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKQLSGKRVFQDGYNNDSSSNTSSSYKRSKSQDIFSSQTFFDFRNIDNKSRIIAEYSPSISLASWNFASMAKQGKDSTTNYINPCFNIYFSECSKGLDRYLYRIYPNSASSYGSILPNYRKLNNVPAVPHGSSVIGCGGGGGDDRNRTINKDLTNPCDISPTFAKKRASTEQEQADNHREVSFIDFLGVGVSSS 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g2789 387 ProSiteProfiles Myb-like domain profile. 136 186 IPR001005 -
Acco05g2789 387 PANTHER MYB PROTEIN-RELATED 89 215 - -
Acco05g2789 387 Gene3D - 143 203 - -
Acco05g2789 387 MobiDBLite consensus disorder prediction 199 223 - -
Acco05g2789 387 ProSiteProfiles Myb-like domain profile. 89 135 IPR001005 -
Acco05g2789 387 FunFam MYB transcription factor 89 140 - -
Acco05g2789 387 SUPERFAMILY Homeodomain-like 88 182 IPR009057 -
Acco05g2789 387 SMART sant 88 137 IPR001005 -
Acco05g2789 387 SMART sant 140 188 IPR001005 -
Acco05g2789 387 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 135 IPR017930 -
Acco05g2789 387 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 136 190 IPR017930 -
Acco05g2789 387 Gene3D - 89 140 - -
Acco05g2789 387 CDD SANT 92 133 IPR001005 -
Acco05g2789 387 CDD SANT 152 183 IPR001005 -
Acco05g2789 387 MobiDBLite consensus disorder prediction 189 223 - -
Acco05g2789 387 Pfam Myb-like DNA-binding domain 92 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g2789 Acco-ChrAcco05 43031380 43034919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g2789 87 236 MYB Transcription Factor Family AT1G17950 65.333 1.15e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco05g2789 Myb_DNA-bind_6 2.9e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco10g2472 10 36089025 36090382 Acco05g2789 05 43031380 43034919 CCT
Acco05g2789 05 43031380 43034919 Acco05g2789 05 43031380 43034919 ECH