Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g2711 ATGGCGCATCTCACCACCGATTCCCCCCTTTCTCGTAGCATAGTTTGTGCTTTCTTAGAATTCCTCAACTCAGTTGAACCGGCTCCTGGCGCTGATGTAGAAGGGCTTGAGGTTGCTAGGGAGTGTTTGACAGAGGTGTTTAAGCTTAACACATCTCCGATTGATGTTCATGCAAAATCTGTTTCTTTGGTCGACATATTTAGGTCCCTTGAATCTAGCAAGCAATGCGAAGCTAGTCAGTCAGATGTTGGGAAACAACCAGATGACATGGATGCATCGGGCTCATTCTCTTCCCACAATGCTGATCATAGACATAAACACTCCGAGGATGAAGATTGGACTCGAAGGTCTTGCACATTTGGAGTATCCAAAGATGAACTGTGTGGGCAATTCTTTAATTCTCTGGAGAAAGTCCATTTCTTTAGGACAAATCCTGATGGAACTGATGACCCAGTGCAACTGGAGAAAGCATCTCGTATATTTAATGATGCTGTAATGGAGATGGAAAGATCTGAGTGTCAGGAGTTTTGTTTGAAGAACATGGCTGAATTGCTGAAATCACAAGGTAATATGGCCATGCAATCAAAGAAATACCCTGATGCGATTGACTTGTATACTTGTGCTATTGCACTTTGTGAAGAGAATGCTGTTTACTACTGCAACAGGGCAGCTGCTTACACTCAGATCCACAAATATACAGAAGCAATTCAAGACTGTCATAAATCTATTGAGATTGACCCGAACTATAGCAAGGCATACAGCCGACTGGGTTTAGCATATTATGCTCAGGGAAATTACAGAGATGCAATTGATAAAGGATTTAGGAAAGCCTTGCTATTGGATCCAAGTAATGAGTCGATTAAAGAAAATATACGGGTTGCTGAGCAAAAATTGATAGAAGAGCAACATCGTGCAGATCACAGTCAGAATTCAAGATCATCTCAAGAGTCTCATAACCAGTCCACACGAGGGTCAATAGGTAATGCAGCCCCACCGCCGTTTAACTCAATGTCGTTTAATGCCAACGACCTTGCAGGCATGTTTATGAACATAGCCGCAAACACTGCCAATGCACATCAAGGACAGCATCCCCAGGAACGGCAAGGAGAAGATAGCGATGCCAATTCTTCTGATGAATCCGAAATAAGAATCAGGAGCAATATCAATTTAAACTTAAACCAAATGCCCGAGGACTTGTCGGGGGCTTTCAGGTCTGTGATGGAAATGTTATCTGGGGCAGCGCCTCCAGGCCGTGGGCAACAAGAAGACCATTTCAATGGAAGAACCGCGCCAAACTAG 1299 0.4365 MAHLTTDSPLSRSIVCAFLEFLNSVEPAPGADVEGLEVARECLTEVFKLNTSPIDVHAKSVSLVDIFRSLESSKQCEASQSDVGKQPDDMDASGSFSSHNADHRHKHSEDEDWTRRSCTFGVSKDELCGQFFNSLEKVHFFRTNPDGTDDPVQLEKASRIFNDAVMEMERSECQEFCLKNMAELLKSQGNMAMQSKKYPDAIDLYTCAIALCEENAVYYCNRAAAYTQIHKYTEAIQDCHKSIEIDPNYSKAYSRLGLAYYAQGNYRDAIDKGFRKALLLDPSNESIKENIRVAEQKLIEEQHRADHSQNSRSSQESHNQSTRGSIGNAAPPPFNSMSFNANDLAGMFMNIAANTANAHQGQHPQERQGEDSDANSSDESEIRIRSNINLNLNQMPEDLSGAFRSVMEMLSGAAPPGRGQQEDHFNGRTAPN 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g2711 432 Gene3D Tetratricopeptide repeat domain 178 330 IPR011990 GO:0005515
Acco05g2711 432 ProSiteProfiles TPR repeat profile. 216 249 IPR019734 GO:0005515
Acco05g2711 432 SMART tpr_5 216 249 IPR019734 GO:0005515
Acco05g2711 432 SMART tpr_5 182 215 IPR019734 GO:0005515
Acco05g2711 432 SMART tpr_5 250 284 IPR019734 GO:0005515
Acco05g2711 432 Gene3D Immunoglobulin FC, subunit C 4 73 - -
Acco05g2711 432 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 177 327 - -
Acco05g2711 432 MobiDBLite consensus disorder prediction 302 337 - -
Acco05g2711 432 PANTHER LD24721P 1 413 IPR047150 -
Acco05g2711 432 SUPERFAMILY TPR-like 181 295 IPR011990 GO:0005515
Acco05g2711 432 MobiDBLite consensus disorder prediction 77 110 - -
Acco05g2711 432 MobiDBLite consensus disorder prediction 364 380 - -
Acco05g2711 432 ProSiteProfiles TPR repeat profile. 250 284 IPR019734 GO:0005515
Acco05g2711 432 Coils Coil 284 304 - -
Acco05g2711 432 MobiDBLite consensus disorder prediction 410 432 - -
Acco05g2711 432 MobiDBLite consensus disorder prediction 312 337 - -
Acco05g2711 432 Pfam Tetratricopeptide repeat 216 249 IPR001440 GO:0005515
Acco05g2711 432 MobiDBLite consensus disorder prediction 357 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g2711 Acco-ChrAcco05 42478781 42485093 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g2711 181 278 U-box Gene Family AT3G07370 35.714 1.17e-10 60.1