Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g2682 ATGTCTAACGCCCCCAGATCCACCGGCACTGTGAAGTGGTTCAATGCCTACAAGGGATTCGGATTCATTGCCCCTGATGACGGTGGCGATGATCTCTTTGTCCACCACACTTCCATCCGATCCCACGGTTATCGCAACCTGTCCGAGGGTCAGCACGTGGAGTTCCTTCTCGATTACGCACAAGACGGACGAACCAAAGCTGTTGACGTCACCGCTCTCCTGAGATCTCGTCCTTCTGACGGCGGCGGAAGAGGGTTTTATGGAGGAAGAGGCAGAGGCGGTGGATATGGTGGACGCTACGCTGACGGAAACACTCGCGGTGGTCCTTACCGGTATGGTCGGAGAGGTGAAGGATACGGTGGTGGTGGAAGATACAGCGAGGGCCTCGATTGTTACAATTGTGGCCGCGTTGGTCATTTGGCAAGAGACTGTTATCATGGTGCTGGTGGAGGCACTCGCAGACGTGGTGGTAATAGTGGCGGCGGAGGCGGAGTGTGCTTTCATTGCGGGGAGGAAGGGCATTTTGTGAGGGATTGTCCCACTATCGATAAATGA 555 0.5532 MSNAPRSTGTVKWFNAYKGFGFIAPDDGGDDLFVHHTSIRSHGYRNLSEGQHVEFLLDYAQDGRTKAVDVTALLRSRPSDGGGRGFYGGRGRGGGYGGRYADGNTRGGPYRYGRRGEGYGGGGRYSEGLDCYNCGRVGHLARDCYHGAGGGTRRRGGNSGGGGGVCFHCGEEGHFVRDCPTIDK 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g2682 184 ProSiteProfiles Zinc finger CCHC-type profile. 131 144 IPR001878 GO:0003676|GO:0008270
Acco05g2682 184 Pfam 'Cold-shock' DNA-binding domain 8 72 IPR002059 GO:0003676
Acco05g2682 184 CDD CSP_CDS 8 71 IPR002059 GO:0003676
Acco05g2682 184 SUPERFAMILY Retrovirus zinc finger-like domains 122 181 IPR036875 GO:0003676|GO:0008270
Acco05g2682 184 ProSiteProfiles Zinc finger CCHC-type profile. 166 180 IPR001878 GO:0003676|GO:0008270
Acco05g2682 184 SMART csp_8 8 73 IPR011129 GO:0003676
Acco05g2682 184 PRINTS Cold shock protein signature 45 63 IPR002059 GO:0003676
Acco05g2682 184 PRINTS Cold shock protein signature 30 39 IPR002059 GO:0003676
Acco05g2682 184 PRINTS Cold shock protein signature 9 24 IPR002059 GO:0003676
Acco05g2682 184 ProSiteProfiles Cold-shock (CSD) domain profile. 6 72 IPR002059 GO:0003676
Acco05g2682 184 ProSitePatterns Cold-shock (CSD) domain signature. 20 39 IPR019844 -
Acco05g2682 184 Pfam Zinc knuckle 131 144 IPR001878 GO:0003676|GO:0008270
Acco05g2682 184 Pfam Zinc knuckle 165 180 IPR001878 GO:0003676|GO:0008270
Acco05g2682 184 SUPERFAMILY Nucleic acid-binding proteins 2 72 IPR012340 -
Acco05g2682 184 SMART c2hcfinal6 130 146 IPR001878 GO:0003676|GO:0008270
Acco05g2682 184 SMART c2hcfinal6 165 181 IPR001878 GO:0003676|GO:0008270
Acco05g2682 184 Gene3D - 122 155 - -
Acco05g2682 184 Gene3D - 156 184 - -
Acco05g2682 184 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 181 - -
Acco05g2682 184 Gene3D - 1 71 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g2682 Acco-ChrAcco05 42262348 42262902 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Acco05g2682 CSD 1.4e-22 CL0021