Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g2658 ATGCCTTTGCCACCGTCTTGGAAACCGCCGCCACAGCCTTGCCGTCTTCATCCTAAGATTTGGCGAGCATGCGCCGGCACTTCCGTTCAAATCCCTACCCTGAATTCCAGGGTTTATTACTTCCCACAAGGCCATTTGGAACAAGCCTACTCGGCTCCTCCATCCCTCTCCCCTCTTCTCCTGTCCAAGCCCTTCATTCAATGCCGCGTCTCCTGGGTTGAATTCCTCGCTGACCCTGTTACTGACGAGGTCTTTGCCAAGCTTGACCTCCAACCACTCAGTGATTTTGAAGCCACCCACGACCACTTTCATCCCGTCGGCGAATGCGCAGAAGTACAGGGCGATGACAATGTGGGATCGTTTACCAAGGTTCTCACGCCTTCTGACGCCAACAATGGTGGTGGATTCTCAGTTCCTAGGTTCTGTGCTGACTCCATCTTCCCGCCATTGGATTTACAGTCTGATCGACCGAATCAGACATTGGCTATCACTGACGTTCACGGCATCGTCTGGGAATTTCGTCACATTTATCGAGGGACGCCTCGGCGGCACTTGCTCACTACTGGATGGAATAAGTTTGTCAATCACAAGAAGTTGATCGCCGGTGATTCCGTGGTTTTCATTAAGGATTCCGCGGGGGATATGTCCATTGGGGTTCGTAGAGCTCTGCGATTCAGTGCTGGAAATCGAGGCCATTGGGCCGGAAGTTGCACCGACATTGGTGGCGTAAAAACTAAGGTTAAGGAGGAGCAGCGGGAAGATTACCACACTGGTTTCGGAGAATTTTCGAGGAATGGGAGGGGAAAGTTGTCTGCCAAGGCAGTTGCGGACGCCGCAGAATCGGCAGCACAAAATAAGCCGTTCATAATTGTGTATTATCCTAGACCGGGGTCGACAGACTTTGTGTTGAAGGCGGAGGTTGTGGAGGAAGCGCTAAAAGTCAGATGGACTTCTGGAATGAGAGTCAAAATGGCTATGGAGGCAGAGGATTCGTCCAGGATGACCTGGTTTCACGGGACGGTCTATTCGGTATCTGCTCCTCTTGGTCTCGAACATTGGCCAGATTCTCCTTGGCGCATGCTTCAGATTATGTGGGATGATCCTGAAGTGTTGCAGAAAGCAAAGCGAGTCAACCCTTGGCAGGTTGAACATATTGCCCCCTCAGCTCTGCTTCATACAGCTTTTCCCCCGGCGAAGAAGTTTAAAGCCACTAAGTATGGGGGGTTGCCAATTGATAGAGGGGAAGACCCCTCATTGACTACGATGAGATTCATTAACTCGACAACAGGACACTTGAATCACTCATTGTTGAAGGACAATACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATTTTTTGTTTCGAGATTTTCAAACTTTATAAATGATAATGCTCATCTTTGTGCTGCTAGTTCTTATGTGAACAATTCAGTGCCAAAGTTGAAAACTGTGTCAACAGATTTACACCTGAGCTGTTCTCAATCTGGTCAATTATCACCTGATAGCCACGGTAGAGTTCGCTCCATTGGCAGAGAGATTGTTGGGACCCATTGCTGCAACTCAACAAAACTTGGTGCTGGTTCATTTCAGCTATTTGGTAAGATAATTCAAATCTATCAACCTGTTGAAAGTGGCTTGCATGTTGCTGGCTCTACTGGAAATGAGGTTTCCAATGCATCTGAGTGTACTGGTAATAAGCCCCTGGATAATTCAACTTACTCAAAGTTGGTCAACAGGCTTGATGTTCAATGCCAAAAAGCATCACTAGTTTAG 1779 0.4834 MPLPPSWKPPPQPCRLHPKIWRACAGTSVQIPTLNSRVYYFPQGHLEQAYSAPPSLSPLLLSKPFIQCRVSWVEFLADPVTDEVFAKLDLQPLSDFEATHDHFHPVGECAEVQGDDNVGSFTKVLTPSDANNGGGFSVPRFCADSIFPPLDLQSDRPNQTLAITDVHGIVWEFRHIYRGTPRRHLLTTGWNKFVNHKKLIAGDSVVFIKDSAGDMSIGVRRALRFSAGNRGHWAGSCTDIGGVKTKVKEEQREDYHTGFGEFSRNGRGKLSAKAVADAAESAAQNKPFIIVYYPRPGSTDFVLKAEVVEEALKVRWTSGMRVKMAMEAEDSSRMTWFHGTVYSVSAPLGLEHWPDSPWRMLQIMWDDPEVLQKAKRVNPWQVEHIAPSALLHTAFPPAKKFKATKYGGLPIDRGEDPSLTTMRFINSTTGHLNHSLLKDNTFPAGMQGARHDLFFVSRFSNFINDNAHLCAASSYVNNSVPKLKTVSTDLHLSCSQSGQLSPDSHGRVRSIGREIVGTHCCNSTKLGAGSFQLFGKIIQIYQPVESGLHVAGSTGNEVSNASECTGNKPLDNSTYSKLVNRLDVQCQKASLV 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g2658 592 FunFam Auxin response factor 119 223 - -
Acco05g2658 592 CDD B3_DNA 120 213 IPR003340 GO:0003677
Acco05g2658 592 Pfam Auxin response factor 278 362 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Acco05g2658 592 SMART B3_2 121 223 IPR003340 GO:0003677
Acco05g2658 592 Gene3D - 315 389 - -
Acco05g2658 592 Pfam B3 DNA binding domain 121 221 IPR003340 GO:0003677
Acco05g2658 592 SUPERFAMILY DNA-binding pseudobarrel domain 113 228 IPR015300 -
Acco05g2658 592 ProSiteProfiles B3 DNA-binding domain profile. 121 223 IPR003340 GO:0003677
Acco05g2658 592 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 546 IPR044835 GO:0003677|GO:0006355|GO:0009725
Acco05g2658 592 Gene3D - 118 223 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g2658 Acco-ChrAcco05 42066744 42070161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g2658 15 552 B3 DNA Binding Superfamily AT1G77850 48.435 5.10e-154 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Acco05g2658 B3 2.2e-20 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g2658 05 42066744 42070161 Acco10g2353 10 35238289 35241517 CCT
Acco05g2658 05 42066744 42070161 Acco05g2658 05 42066744 42070161 ECH