Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g2642 ATGGGTCGCGTTAAATTGGAGATTAAGAGAATAGAGAACACCATAAATCGTCAGGTTACATTCTCAAAGCGTAGAAATGGCCTCATCAAGAAAGCCTACGAGTTATCCATTCTCTGCGACATTGATATTGCACTCATCATGTTCTCTCCTTCAGGCCGTGTCAGTCACTTTTCCGGCAGAAGAAGAATTGAAGATGTATTCACACGGTACATCAATCTACCAGATCAAGAAAGAGATGGAGCTATAACCTTTCCAGAGCAACCCTACCGCAGGAATATTCAGAACAAAGAGTATTTGTTGAGGACCCTGCAGCAACTGAAAAGTGAAAATGACATAGCTCTTCAGCTGGCCAATCCGGGAGACATCAACTCGGAGATTGAAGAGCTGCAACAAGAAATGAGCAGGTTACAGCAACAGCTTCAAATAGCGGAAGAACGGATACGGATATTTGAACCTGACGCGATGAAGATGACATCAACGGCGGAGCTGGAATCAAGCGAGAAGCATCTGATGGATACGCTGACACGTGTAATGCAGAGAAAGGAGTATCTGATGAGCAAGCACGTATCGTCGTCGTACGACCCGTCGGGGATGACGTCGTTGGAGAACGTGGGATGGCTGGGGGAGGGCGGCAACAACCATTCGCATATGTTCGACCCCTCAGTGTCGTTGGAGCAGCTGACATCGACGGTGTACGAGGCGTTCTCGCAGGGTGGGGGCAGCTCCAACGGTGAGTGCCATGTGGCCAACGAAAACAACGACGGGAATCTGCAGGCGTGGCCTCAGGGCTACACCATATATCCCGCCATGCAGCAGGAGATGGTGGCCGCCGACATGCCGGAGATGATGCCGCCTCAGCTTAACAATGTGGCCCCCATGCCCTCTCACTTTGACTTTGACTCGTCCAAAGCTCCCCGATGA 921 0.5049 MGRVKLEIKRIENTINRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRVSHFSGRRRIEDVFTRYINLPDQERDGAITFPEQPYRRNIQNKEYLLRTLQQLKSENDIALQLANPGDINSEIEELQQEMSRLQQQLQIAEERIRIFEPDAMKMTSTAELESSEKHLMDTLTRVMQRKEYLMSKHVSSSYDPSGMTSLENVGWLGEGGNNHSHMFDPSVSLEQLTSTVYEAFSQGGGSSNGECHVANENNDGNLQAWPQGYTIYPAMQQEMVAADMPEMMPPQLNNVAPMPSHFDFDSSKAPR 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g2642 306 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 219 - -
Acco05g2642 306 Gene3D - 14 92 IPR036879 GO:0003677|GO:0046983
Acco05g2642 306 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Acco05g2642 306 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Acco05g2642 306 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Acco05g2642 306 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Acco05g2642 306 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Acco05g2642 306 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Acco05g2642 306 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Acco05g2642 306 Coils Coil 126 146 - -
Acco05g2642 306 FunFam MADS-box transcription factor 41 13 92 - -
Acco05g2642 306 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Acco05g2642 306 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g2642 Acco-ChrAcco05 41929913 41932378 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g2642 1 290 Type I MADS-box Gene Family AT1G22130 56.913 4.83e-113 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Acco05g2642 SRF-TF 3.9e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g2642 05 41929913 41932378 Acco05g2642 05 41929913 41932378 ECH