Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g2615 ATGGTTTGTTTAGGATCCCAGAACTGGAGAAAGCTAAGATACCAAGGGGAGAGAGAGGAGCTGAGGATAGTCCAAATTAAAATTGCTTATTTAGATCTCACAAGTGTTAGCATATCTTCAGTGGCTCCCCTGCGCGGCAATCCTTGTCTCCGAAAGACTAAAACCCTAGCGAAGTTGGGCATAATCGCTGCACCGCTCGACCTCCACGTTTCAACACCAAATATGTCGCACTTTGGAAGATCTGGTCCTCCAGACATCAGAGACACCTATTCCCTTCTCGTCCTCAATATTACTTTCCGTACAACTGCTGACGACCTCTACCCACTTTTTGACAAGTATGGCAAGGTCGTCGATGTCTTCATCCCCAGAGACCGAAGGACTGGCGAATCACGAGGCTTCGCTTTTGTTCGTTATAAGTATGCAGACGAGGCTCAGAAGGCAGTAGATAAGCTTGATGGAAGAGTGGTCGATGGAAGAGAAATTATGGTTCAATTCGCAAAATACGGACCTAATGCTGAGAAAATTCAAAAGGGCAGGATAGCGGAAACATCCTCCAAGCCAAGAGGGAGGTCAAGAAGCCGCAGTCCTCGTCCTAGGCATAGGGATGAACATAGAGACAGGGACTACAGGAGGAGAAGTAGGAGTAGGGAAAGATATGATCGCGACAAGTACCGTGAAAGGGATAGGGATTATCGTCGCCGGAGTAGGAGCCACAGTGTAAGTCCTGATCGGCATAAAGATCGTAGGAGAGGAAGAGATGACAAGGAGAGAAGAACTCGAAGCAGATCAGTTGATAGTGCATCGCCTGTTCGGCATGGCTCCAGTCCTCGTAGAAGTCCATCTCCGCAAAGGATGTCTTCTCGAGATGAGCGGCATGATGAACAGAATAGTCGGGAGCAATCACCTGCTCATAAGGATGTTTCACCACGTGATCGTCCTGTTGATTCTCGAAGCCCGTCTCACAAATCTGATGCTGATGAATGA 984 0.4807 MVCLGSQNWRKLRYQGEREELRIVQIKIAYLDLTSVSISSVAPLRGNPCLRKTKTLAKLGIIAAPLDLHVSTPNMSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGESRGFAFVRYKYADEAQKAVDKLDGRVVDGREIMVQFAKYGPNAEKIQKGRIAETSSKPRGRSRSRSPRPRHRDEHRDRDYRRRSRSRERYDRDKYRERDRDYRRRSRSHSVSPDRHKDRRRGRDDKERRTRSRSVDSASPVRHGSSPRRSPSPQRMSSRDERHDEQNSREQSPAHKDVSPRDRPVDSRSPSHKSDADE 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g2615 327 MobiDBLite consensus disorder prediction 174 327 - -
Acco05g2615 327 MobiDBLite consensus disorder prediction 266 282 - -
Acco05g2615 327 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 168 IPR000504 GO:0003723
Acco05g2615 327 Gene3D - 72 179 IPR012677 -
Acco05g2615 327 MobiDBLite consensus disorder prediction 283 327 - -
Acco05g2615 327 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 88 312 - -
Acco05g2615 327 MobiDBLite consensus disorder prediction 199 265 - -
Acco05g2615 327 CDD RRM_SRSF2_SRSF8 92 164 - -
Acco05g2615 327 SUPERFAMILY RNA-binding domain, RBD 73 176 IPR035979 GO:0003676
Acco05g2615 327 FunFam Serine/arginine-rich splicing factor SC35 78 177 - -
Acco05g2615 327 SMART rrm1_1 91 164 IPR000504 GO:0003723
Acco05g2615 327 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 161 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g2615 Acco-ChrAcco05 41743283 41747928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g2615 62 166 Eukaryotic Initiation Factors Gene Family AT3G11400 31.061 2.18e-10 58.9