Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g2608 ATGGGAAGATCCCCTTGCTGCGATGAGAATGGCCTCAAGAAAGGACCATGGACTCCTGAGGAAGACGAAAAGCTTGTTCATTACATTCAGAAACACGGCCATGGAAGTTGGAGAGCTCTTCCCAAGCTAGCTGGTCTGAATAGATGTGGAAAAAGCTGTAGGCTAAGGTGGACCAATTATTTAAGGCCTGACATCAAAAGAGGAAATTTTTCTCAAGAAGAAGAGCAAACCATATTGCATCTCCATTCCATCCTTGGAAACAAATGGTCAGCAATTGCATCCCATCTTCCGGGCAGGACTGATAACGAGATCAAGAATTTCTGGAACACACATCTAAAGAAGAAGTTAATTCAGATGGGTTTTGATCCAATGACCCACCAGCCGCGAACAGATCTTGTTTCCACCTTGCCCTATCTGCTAGCTCTGATCAACATGACCGAACTTATGGACCCTCATGACCAAGCTGTGAAACTACAAGCAGAGGCACTTCAAATGGCAAAGCTTCAATACTTAAACTCTTTGCTCCAATCCACAACAACTTCCTTGAATCCCACCGCCAACTCCAGTGACCAAAATGGCCTCATCACAAACATGGAAACCATCAATATGTTAAATTCAATGGCTAATTTGAAAGAGAACCCAGATATGATGAACTACCCACAGCAGTTTAATAATAATAATCATCCAGGCTCATTTTCTCATCATGGGATAGCTACCCAACCACTCCACCACCCAAACATGTTATTATCTCACATGTCATCAGACCCACCACAAGTCCCTTTCAGCTCCCAATCAAGTTTGAATAGTGATCAATATCAGGGTCAAGTTACAAACTTTACAATGATTAGTCATGGGGGTCATCATCATACGACACTTGATCATGATGAATCTTCATCAATAATGCCATTATCTATGCCCCCTCTGGTTGGAGATGCCACCAGCAGCTCTTCTAGCCATGGAGGAATTTCGTCTTCATCTTATTGGCCTGAACTATTTTTCGAGGACTCCATTATGCATGAGCTCTCTTAG 1029 0.4295 MGRSPCCDENGLKKGPWTPEEDEKLVHYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGNFSQEEEQTILHLHSILGNKWSAIASHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHQPRTDLVSTLPYLLALINMTELMDPHDQAVKLQAEALQMAKLQYLNSLLQSTTTSLNPTANSSDQNGLITNMETINMLNSMANLKENPDMMNYPQQFNNNNHPGSFSHHGIATQPLHHPNMLLSHMSSDPPQVPFSSQSSLNSDQYQGQVTNFTMISHGGHHHTTLDHDESSSIMPLSMPPLVGDATSSSSSHGGISSSSYWPELFFEDSIMHELS 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g2608 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Acco05g2608 342 CDD SANT 69 112 IPR001005 -
Acco05g2608 342 FunFam MYB-related transcription factor 13 66 - -
Acco05g2608 342 CDD SANT 16 61 IPR001005 -
Acco05g2608 342 Gene3D - 69 116 - -
Acco05g2608 342 Gene3D - 11 67 - -
Acco05g2608 342 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Acco05g2608 342 MobiDBLite consensus disorder prediction 251 269 - -
Acco05g2608 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Acco05g2608 342 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Acco05g2608 342 MobiDBLite consensus disorder prediction 246 269 - -
Acco05g2608 342 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Acco05g2608 342 SMART sant 13 63 IPR001005 -
Acco05g2608 342 SMART sant 66 114 IPR001005 -
Acco05g2608 342 FunFam Transcription factor MYB39 69 130 - -
Acco05g2608 342 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 246 - -
Acco05g2608 342 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Acco05g2608 342 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g2608 Acco-ChrAcco05 41680096 41681331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g2608 1 342 MYB Transcription Factor Family AT1G34670 52.033 1.05e-116 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco05g2608 Myb_DNA-binding 4.1e-17 CL0123