Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g2580 ATGGCGAGAATACACAGAAAACTCTTCCCAGAACCATCCAATATAAACCAAACACAAGAATGTCCTGAATTTTGCGACCCAGCTTGCCCTTATAGCTGCTATTCTTTCCCGGACTACTACTTCCCGCCACCTCCGCCTCCTCCACCTCCTTTTTCGGCCACCGATCATTCCAGTTCAGGTTCTCATATCTCTTCCTATCTCATCATTCTTGCCTCTCTGTTCTCTGCCATTTTTATTCTCCTGGGTTTATACGTGATCAAAGCCAAGTGTTACGCTAGTTGGTGTGGCTGGAGACAAAATGGATCCCGATCAGAGGCCTCAGACCAAGAGTTTATTAATGAGAACCAAGTTGATCACCCTGTCTGGTTTATCACCACCGCTGGTCTGCAACAATCGATTATAAATTCTATCACAGTCTGTAAGTATAAAAGGGGTGAAGGGTTGATCGAAGGAACCGAATGTTCTGTGTGTTTGAACGAATTTCGCGAAGGTGAAACCTTGAGACTCTTGCCCAAGTGTAGCCATGCTTTTCACATACCCTGTATTGACACTTGGTTGCGTTCTCATACCAATTGTCCTCTCTGTCGAGCTGGGATCGTTTTGAACAATGTCAGACCTGAGGCTCCAGGGTCAAATGTGGCTTCAACGGAGCTGAACTCTGACAATTCACGTAGGAACCAAGAGATTCAAACTGAGAATCCGCCAAATGATGGAGAAGTAAACAACAATATGCCGGTAATTGCAAATGGGGCGTCAGGAAACAGAGCTGGAACAGGGGAAATTACCCAAGACTTGAACGATAATTTGGTTTCAAAGGAGCATGCGAATGTTGTCCTCAAAGATCCAAAAGAGGATCATGGGGTTTTAAAACATGGGAAGAGAATTGGGATAAGGTCTTTGTCTATGGATTCTATAATGGCAAATTCTTCTACTTCGGAAACTGAAGAAAGCCATCCAGTGTTTAAAGAAATTCGGCGTTCCTCTGTTACAAAATGTCTACACCTGAGCCCTGTTCCAATGAAAAGGTCGTTCTCTTGCAGTGGAAGGATTCTATCTGCCAGAGATCACAGGAATCTACACATAAGCCTTCCTTATTAG 1098 0.4417 MARIHRKLFPEPSNINQTQECPEFCDPACPYSCYSFPDYYFPPPPPPPPPFSATDHSSSGSHISSYLIILASLFSAIFILLGLYVIKAKCYASWCGWRQNGSRSEASDQEFINENQVDHPVWFITTAGLQQSIINSITVCKYKRGEGLIEGTECSVCLNEFREGETLRLLPKCSHAFHIPCIDTWLRSHTNCPLCRAGIVLNNVRPEAPGSNVASTELNSDNSRRNQEIQTENPPNDGEVNNNMPVIANGASGNRAGTGEITQDLNDNLVSKEHANVVLKDPKEDHGVLKHGKRIGIRSLSMDSIMANSSTSETEESHPVFKEIRRSSVTKCLHLSPVPMKRSFSCSGRILSARDHRNLHISLPY 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g2580 365 ProSiteProfiles Zinc finger RING-type profile. 154 196 IPR001841 -
Acco05g2580 365 Pfam Ring finger domain 153 196 IPR001841 -
Acco05g2580 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 202 IPR013083 -
Acco05g2580 365 PANTHER RING-H2 FINGER PROTEIN ATL16 49 346 IPR044600 GO:0016567|GO:0016740
Acco05g2580 365 FunFam RING-H2 finger protein ATL54 129 202 - -
Acco05g2580 365 CDD RING-H2_EL5-like 153 196 - -
Acco05g2580 365 SMART ring_2 154 195 IPR001841 -
Acco05g2580 365 MobiDBLite consensus disorder prediction 206 242 - -
Acco05g2580 365 MobiDBLite consensus disorder prediction 208 242 - -
Acco05g2580 365 SUPERFAMILY RING/U-box 147 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g2580 Acco-ChrAcco05 41452961 41454058 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g2580 1 204 C3H Transcription Factor Family AT1G72220 48.899 6.70e-61 199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g2580 05 41452961 41454058 Acco05g2580 05 41452961 41454058 ECH