Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g2579 ATGGCACTTGAGGCTGTGGTGTTCCCACAAGATTCATTAAACTACAGTTACATGTTAGGACTTGGTTATGGTATAGAAGCAGAACAAGAGAGAGGCTTTGTTGGGATAACAGGCAATAATAATGCGAATTGGGATTATTCTTGGGTGTTGCAGGACGTGAAGGGATCATGGGACAGCTCTAACTCTTCTCCACGACAATCTGTTGTGTCCCCTCCGGCGGCTTCTTCCACAGGAGGAGGACGACGCAAACGACGTCGCATCAAGACCACCAAGAACCAGGAGGAAATCGAGAGCCAGAGGATCACCCACATTGCCGTGGAGCGTAATCGCCGGAAGCAGATGAATGAGTACTTGGCCGTGCTCCGATCCTTGATGCCTTCTTCTTATGTTCAAAGGGGTGACCAAGCATCTATAATTGGTGGCGCCATTAACTTTGTAAAACAGCTGGAACAACATCTTCAGTCGATGCAGGGACAGAGCAAAACAAGGCCACGCACAGAACAGAGCCCCTTTGCCGAGTTCTTCACGTTCCCCCAGTACACAACACCTGCAACTCAGAGCGGCGGCGGCTGTGCGGAGGCGAACGACGTCTTGATGGGACAAAACCAGAAGGAGGTTGGAGCGGCGGACATAGAAGTGAGCTTGGTGGACAGCCACGCCAACCTCAAGATACTCTCTAAGAAACGGCGGGGCCAGCTTGTGAAGATGGTCGTTGGGCTTCAGAGTCTTAGACTCTGCATTCTTCACCTTAACGTTACTACGACTCTCGACGATATGGTTCTGTACTCTGTTAGCGTAAAGGTTGAGGATGAGAGTCGGTTGAACACAGTAGATGAGATTGCAGCTGCTGTGAATCAACTAATGCGCAGAATTCAAGAAGAAGCTGCTTTCTGTTGA 897 0.4994 MALEAVVFPQDSLNYSYMLGLGYGIEAEQERGFVGITGNNNANWDYSWVLQDVKGSWDSSNSSPRQSVVSPPAASSTGGGRRKRRRIKTTKNQEEIESQRITHIAVERNRRKQMNEYLAVLRSLMPSSYVQRGDQASIIGGAINFVKQLEQHLQSMQGQSKTRPRTEQSPFAEFFTFPQYTTPATQSGGGCAEANDVLMGQNQKEVGAADIEVSLVDSHANLKILSKKRRGQLVKMVVGLQSLRLCILHLNVTTTLDDMVLYSVSVKVEDESRLNTVDEIAAAVNQLMRRIQEEAAFC 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g2579 298 CDD bHLH_AtFAMA_like 101 169 - -
Acco05g2579 298 SMART finulus 104 155 IPR011598 GO:0046983
Acco05g2579 298 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 98 166 IPR036638 GO:0046983
Acco05g2579 298 Pfam Helix-loop-helix DNA-binding domain 99 150 IPR011598 GO:0046983
Acco05g2579 298 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 98 149 IPR011598 GO:0046983
Acco05g2579 298 MobiDBLite consensus disorder prediction 57 96 - -
Acco05g2579 298 PANTHER MAX DIMERIZATION, MAD 69 295 - -
Acco05g2579 298 Gene3D - 88 164 IPR036638 GO:0046983
Acco05g2579 298 MobiDBLite consensus disorder prediction 57 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g2579 Acco-ChrAcco05 41447231 41448312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g2579 1 268 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 47.115 1.33e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco05g2579 HLH 3.5e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g2579 05 41447231 41448312 Acco10g2284 10 34741390 34742548 CCT
Acco05g2579 05 41447231 41448312 Acco05g2579 05 41447231 41448312 ECH