Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g2578 ATGCCCTCCCTCCTCCTCCTTCTCCTCCTCCTTCTTCATTCCTCTTTCCCTTCCTTCGCCCAGTCCACATTTTCCCCTCCTTTCTCTGCCCCACCCGATTCATTTGCCCGTATCCGATTCGATAAATCCATGGCCATCGTTTTGGTCATCCTCGTTGTCGTCTTCTTCGCCTTGGGCTTCCTCTCCGTCTACTCTCGTCAGTGCACAGAGCGACGATTCCGAGGAACTGACGAAGATTTCCCCATCGGGAACAGCGAGCGCCACCCCCGCGGCCTCGACCCCGAAATCATCCGAACCTTCCCCACCTTCGTCTACTCGACCGTCAAGGGTCTTAAAATTGGAAGAAGCACCCTGGAATGCGCCGTCTGCTTGAACGAATTTCAAGATCATGAAACTCTGCGTTTCATTCCCAAATGCAGTCACGTGTTCCACCCCGCTTGCATTGACCTCTGGTTATCCTCTCACTCTACCTGCCCTGTTTGTCGTGCCAACCTACTTCCCAGGCCGGATGAAGTCTCCTACGTCGCAATTCAGATGCCCGACTCTCCTGCCCAATCCGATCACCAACAGAACGCCGGCGATATCATCCAACATGATCAACAAGTAGGTGAATCATTATCCCCCAAGAACAGAGACATCTTCCATCGGAATTCTTCTCTGAGGTCAGGGATTTCGAGCTTGTTTCCACGATCACACTCGACGGGACACTCGCTGGTTTCGGCGGCGGAGGATCAGGAGAGGTTTACTCTAAGATTGCCGGAGGAGGTGAGGAAGGGGCTTCTTAGGCCGGCATTCGAGACAATAAGTAGTGAGAGGAGTGGTTACAGGACGAGAAGCGTGGGGAGTGGAGTTGGGCGGTTCGAGCGGTTCAGGAAACCGGAGGGGCGGTCCGACTGGTGGCGTTTCATCCATAGGAACAATGCTTCGTCCAGGGAGAGCAGCACGAAGCCACATGCGAGCATGCAAAACTTAGAAGAAAGATCGACGGATCGGTTATGCGCTGAGCCAAGTGAGGATTAG 1020 0.5392 MPSLLLLLLLLLHSSFPSFAQSTFSPPFSAPPDSFARIRFDKSMAIVLVILVVVFFALGFLSVYSRQCTERRFRGTDEDFPIGNSERHPRGLDPEIIRTFPTFVYSTVKGLKIGRSTLECAVCLNEFQDHETLRFIPKCSHVFHPACIDLWLSSHSTCPVCRANLLPRPDEVSYVAIQMPDSPAQSDHQQNAGDIIQHDQQVGESLSPKNRDIFHRNSSLRSGISSLFPRSHSTGHSLVSAAEDQERFTLRLPEEVRKGLLRPAFETISSERSGYRTRSVGSGVGRFERFRKPEGRSDWWRFIHRNNASSRESSTKPHASMQNLEERSTDRLCAEPSED 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g2578 339 Pfam Ring finger domain 119 162 IPR001841 -
Acco05g2578 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 167 IPR013083 -
Acco05g2578 339 SMART ring_2 120 161 IPR001841 -
Acco05g2578 339 FunFam E3 ubiquitin-protein ligase ATL6 82 168 - -
Acco05g2578 339 MobiDBLite consensus disorder prediction 323 339 - -
Acco05g2578 339 SUPERFAMILY RING/U-box 114 169 - -
Acco05g2578 339 CDD RING-H2_EL5-like 119 162 - -
Acco05g2578 339 MobiDBLite consensus disorder prediction 308 322 - -
Acco05g2578 339 PANTHER RING FINGER DOMAIN-CONTAINING 22 171 - -
Acco05g2578 339 MobiDBLite consensus disorder prediction 308 339 - -
Acco05g2578 339 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g2578 Acco-ChrAcco05 41422321 41423340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g2578 4 262 Rapid Response to Elicitors AT3G05200 39.259 3.13e-55 183
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g2578 05 41422321 41423340 Acco10g2600 10 36859051 36861086 CCT
Acco05g2578 05 41422321 41423340 Acco05g2578 05 41422321 41423340 ECH