LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco05g2571	ATGTTTACGAGGAAGAAAAGGAAAGGAAGTGAGACAGATGCATCCTCAAATATCCCAGAAATCTTGAGTTCACATCATGTGAACCATGGATCACTGTCATCAAATTTGAAGCCTCATTACTCTCTTGAAGATTGTTCCAGATTGAAGAAGAGGTGTAAAGAAGATGCTGATGCAGAGCCGGTTGCTTCCTGTAGTAAAAGGCTTGCAGGCTTTGCCACCGCTCCACCTTGTGGGACATCATCTTTGATCACGCCTGGAAGAGGTCTTAAGAGGAAGATAGGATGCATTGATGTTGCCACCCAAATGGGCAGGAAGAAAAAGATAGAGGATGATTATGTTTCTGGTGAAACAATTGGACAGGGCAAATTTGGATCTGTATCTTTGTGTCGGTCCAGGCTTAGTGGAGCAGAATATGCATGTAAGACACTGAGGAAGGGGGAGGAGACTGTTCATCGAGAAGTGGAGATAATGCAACACTTATCTGGACATCCTGGGGTTGTGACGCTGCAGGCAGTGTATGAAGAAGCTGACTGCTTCCATCTTGTAATGGAGTTGTGTTCTGGAGGGCGATTGATTGATAGGATGGTTGAGGAGGGCCGCCCTTATACAGAGCAAAGGGCTGCTAATGTAATCAAGGAAGTGATGTTAGTCATTAAGTATTGCCATGATATGGGAGTTGTGCACAGAGATATCAAACCTGAAAATATCCTTCTAACAGCAACAGGAAAAATAAAGCTTGCAGATTTTGGGCTGGCCATGAGAGTATCTAATGGTCAGAACTTGACTGGTTTAGCTGGAAGCCCTGCATATGTTGCTCCAGAGGTATTGGTGGGTAGCTATTCTGAGAAGGTGGATGTATGGAGTGCTGGAATTCTCCTGCATACTCTGTTAGCTGGCTTTCTTCCATTTCATGGAGATTCGTTGGAAGCAATCTTCGAGGCTATTAAGAATGTTAAACTGGATTACCAAAAGGGTATGTGGGAACTGATATCTAAGCCTGCTCGAGATCTTGTTGGGAGGATGCTGACAAGGGATGTTCAAACAAGGATCACAGCTGATGAAGTACTTAGGCATCCGTGGATACTATTCTACACAGAACCTACTTTAGAAAAACTGCCCATCAGAACAAGGTTGAAGCATCAAATAGGAGCCACTTGCTACTGCCAGTTTATTGCACCAGGACTGAGGTCAGGAGGAAACAAGATAGACGACGGTTCCCTTGGGGAAATTTCAAGCCCGCTTTCATCCTCGGAGTCGGATAGCAGCAATTCAGAAGATGAGGGCGATGGTGTGTTGATTGATGTGCTGGCATCTGCGATTTCACATGTGAGGATATCCGAACCCAAGAGAAGCAGGTTGTGTGGACCAACAGGTCCAATGGATCAGCAAGGTTCATCTAACATGAAGGCTAACAACCTCTGTAAAGCATTTTGA	1434	0.4491	MFTRKKRKGSETDASSNIPEILSSHHVNHGSLSSNLKPHYSLEDCSRLKKRCKEDADAEPVASCSKRLAGFATAPPCGTSSLITPGRGLKRKIGCIDVATQMGRKKKIEDDYVSGETIGQGKFGSVSLCRSRLSGAEYACKTLRKGEETVHREVEIMQHLSGHPGVVTLQAVYEEADCFHLVMELCSGGRLIDRMVEEGRPYTEQRAANVIKEVMLVIKYCHDMGVVHRDIKPENILLTATGKIKLADFGLAMRVSNGQNLTGLAGSPAYVAPEVLVGSYSEKVDVWSAGILLHTLLAGFLPFHGDSLEAIFEAIKNVKLDYQKGMWELISKPARDLVGRMLTRDVQTRITADEVLRHPWILFYTEPTLEKLPIRTRLKHQIGATCYCQFIAPGLRSGGNKIDDGSLGEISSPLSSSESDSSNSEDEGDGVLIDVLASAISHVRISEPKRSRLCGPTGPMDQQGSSNMKANNLCKAF	477

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco05g2571	477	SMART	serkin_6	112	361	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco05g2571	477	MobiDBLite	consensus disorder prediction	1	20	-	-
	Acco05g2571	477	ProSiteProfiles	Protein kinase domain profile.	112	361	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco05g2571	477	CDD	STKc_CAMK	111	360	-	-
	Acco05g2571	477	SUPERFAMILY	Protein kinase-like (PK-like)	103	378	IPR011009	-
	Acco05g2571	477	MobiDBLite	consensus disorder prediction	402	428	-	-
	Acco05g2571	477	FunFam	Serine/threonine-protein kinase PEPKR2	103	431	-	-
	Acco05g2571	477	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	226	238	IPR008271	GO:0004672\|GO:0006468
	Acco05g2571	477	Pfam	Protein kinase domain	112	361	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco05g2571	477	Gene3D	Transferase(Phosphotransferase) domain 1	103	387	-	-
	Acco05g2571	477	PANTHER	SERINE/THREONINE-PROTEIN KINASE	98	381	-	-
	Acco05g2571	477	ProSitePatterns	Protein kinases ATP-binding region signature.	118	141	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco05g2571	Acco-ChrAcco05	41378379	41380697	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco05g2571	96	360	EF-hand Containing Proteins	AT2G38910	43.478	1.31e-75	246

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Acco05g2571		Pkinase	2.3e-68	CL0016