Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g2561 ATGGACTTTGAGGAGCACGACCAGCAAGAGGACGACATCGAGATCCCGGTGTCGCCTCCTGCTTACGACTCCCTCGCCAACAACTCTGTCCCCAGGTCCAAACTGAACGTCTCCGGAGCACCGACAGGAGAGGGTACTGGCGCCTCCTCCGTCACCCCTGGCCGTAAAGCTGAGCCCGCCAGGTACCGAGAATGCCAAAAGAACCACGCCGTCAGCCTCGGTGCACAAGCGGTCGACGGCTGCGGAGAGTTCATCCCGGCGGGAGAGGAAGGCACGCTCGACGCTCTAAAATGCGCCGCTTGTAACTGTCACCGCAATTTCCACCGCAAGGAGACAGACAGCGGCGAAATGACCCCGTATCAGCCTCCGCCACCCCCGCACTACCACTACCACCAGCAGTATCCCCCGTACTACCGTGCGCCGCCGCCTCCAGCCGGGTACCTCCACCACCATCTATCAGCTCATCCGATGGCGCTGCATCGGTCGTTGGCTCTGCCGGCTCCGGCGCCGCTTAGAGACGAAGAGGACATGTCGAACCCGAGCAGCAGCGGAGGCGGCGGAAGTGGTGGTGGGGGAGGGAAGAAAAGGAGTAGGACCAAGTTCACGCAGGAGCAGAAGGAGAAGATGCTGGAATTCGCGGAGCGTATCGGGTGGAGGATCCAGAAGCATGATGAAGCTGCGGTGGAGCAATTCTGTGCGGAAACTTGTGTCAAGAGACATGTACTTAAGGTTTGGATGCACAACAACAAGAACACTCTTGGTAAGAAACCCTAA 774 0.5943 MDFEEHDQQEDDIEIPVSPPAYDSLANNSVPRSKLNVSGAPTGEGTGASSVTPGRKAEPARYRECQKNHAVSLGAQAVDGCGEFIPAGEEGTLDALKCAACNCHRNFHRKETDSGEMTPYQPPPPPHYHYHQQYPPYYRAPPPPAGYLHHHLSAHPMALHRSLALPAPAPLRDEEDMSNPSSSGGGGSGGGGGKKRSRTKFTQEQKEKMLEFAERIGWRIQKHDEAAVEQFCAETCVKRHVLKVWMHNNKNTLGKKP 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g2561 257 FunFam Zinc-finger homeodomain protein 2 183 255 - -
Acco05g2561 257 Gene3D - 179 254 - -
Acco05g2561 257 MobiDBLite consensus disorder prediction 22 49 - -
Acco05g2561 257 NCBIfam homeobox domain, ZF-HD class 194 251 IPR006455 -
Acco05g2561 257 MobiDBLite consensus disorder prediction 1 59 - -
Acco05g2561 257 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 61 111 IPR006456 -
Acco05g2561 257 MobiDBLite consensus disorder prediction 170 203 - -
Acco05g2561 257 Pfam ZF-HD protein dimerisation region 61 112 IPR006456 -
Acco05g2561 257 SUPERFAMILY Homeodomain-like 181 255 IPR009057 -
Acco05g2561 257 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 62 111 IPR006456 -
Acco05g2561 257 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 50 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g2561 Acco-ChrAcco05 41333747 41334520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g2561 1 253 ZF-HD Transcription Factor Family AT4G24660 50.388 1.27e-69 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Acco05g2561 ZF-HD_dimer 3.4e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g2561 05 41333747 41334520 Acco10g2272 10 34644764 34647190 CCT
Acco05g2561 05 41333747 41334520 Acco05g2561 05 41333747 41334520 ECH